Semidán Robaina

PHDegen | Computational Systems Biologist | Python dev

Modeling planktonic microbial communities to help restore marine ecosystems

[Semidán Robaina @srobainae]

I computed the distribution of each amino acid across protein sequence, i.e., from start to end, for all sequences in the @uniprot database! Some interesting results...
#Bioinformatics #Proteins #Python #ThingsIDoForFun

https://t.co/ln0ABzg0RT

[Semidán Robaina @srobainae]

Call me a romantic, but I miss those times when it was us thinking, writing, analyzing. When it was a human thing, even if imperfect or less efficient. Oh well, and also when we didn't fear about AI killing us all.

[Semidán Robaina @srobainae]

Great to see our work out and in DeSci Nodes! LFG #DeSci #ReFi #naturebasedsolutions

[DeSci Labs @DeSciLabs]

"Applications of marine microbial community models in the nature-based economy" is a brand new node with code and data associated from the @NewAtlantisDAO community!

Check it out at https://t.co/g6eDO80fdL

[Semidán Robaina @srobainae]

So great to see our preprint published! Dokdonia is such an interesting little marine bug. Here we investigated how temperature impacted its transcriptome, sadly quite relevant in a warming global ocean.

[bioRxiv Microbiology @biorxiv_micrbio]

Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium (Dokdonia sp. MED134) https://t.co/ggqu17e7cc #biorxiv_micrbio

[NewAtlantis @NewAtlantisDAO]

What we're reading this week: "Thermal Responses in Global Marine Planktonic Food Webs Are Mediated by Temperature Effects on Metabolism" by @stephocn @mixotrophe and others.

Here's what we learned 🧵:

https://t.co/a4YQdzFrdN

#ocean #climatechange #plankton #foodweb #microbe

[NewAtlantis @NewAtlantisDAO]

Ocean health is critical.
Headlines these past few months have been a reminder that there needs to be serious change.

Luckily, we have @Ralphchami, @DrOceanJulie, @octavioaburto, @carlosduartephd, and many others helping us build novel solutions to an important challenge.

We recommend listening to one of our favorite podcasts with #ClimateWeek starting tomorrow: https://t.co/snJmVij7iq

[Semidán Robaina @srobainae]

What better place to model marine microbes than the middle of the 🌊Atlantic Ocean 🌊! #metabolism #computationalbiology #bioinformatics

[NewAtlantis @NewAtlantisDAO]

If you enjoyed this thread:

Please check out our Twitter Space next week at 11 AM PST 9/5 where we will talk with @srobainae, a computational biologist.

https://t.co/Prkq9WEdSA

[NewAtlantis @NewAtlantisDAO]

We’re so excited to have NewAtlantis Labs science team member, @jolespin, on our Twitter Space next week to talk about the software suite he developed, VEBA. VEBA’s (Viral Eukaryotic Bacterial Archaeal) mission is to make robust (meta-)genomics/transcriptomics analysis effortless.

#metagenomics #transcriptomics

https://t.co/awceg2tACt

[nixCraft 🐧 @nixcraft]

The Fall of Stack Overflow: SO has lost around 50% of its traffic. This decline is similarly reflected in site usage, with approximately a 50% decrease in the number of Q&A, as well as the number of votes. The AI bots hit SO hard for sure https://t.co/g1hkYIewnw

[🏳️‍🌈Rubén López 🇪🇸 @rubenlodi]

Hoy se jubila María José Blanco tras 33 años dedicada al servicio público. Directora del Centro Geofísico de Canarias y cara visible de las 2 últimas erupciones en España. Bajo su liderazgo germinó el ansiado Centro Volcánico en Canarias que se reclamó durante todo el s.XX

[Semidán Robaina @srobainae]

Evidence of human-driven groundwater depletion tilting Earth axis 80 cm and contributing to ocean water rise.

https://t.co/wt5YCG2EWb

[IGEO (CSIC-UCM) @IGeociencias]

La redistribución humana del agua está haciendo que la Tierra se incline más de lo que debería https://t.co/2Ep7A9ZQNA a través de @ABC_Ciencia

[Adrián Flores @adrifloresrvl]

Recordemos los puntos de vertido de Tenerife. Les dejo también un ejemplo visible desde superficie

Los colores indican el estado de autorización del punto de vertido.
🟢: Autorizado
🔴: No autorizado
🟡: No autorizado (en trámite)
🟠: No autorizado (vencido)

[Semidán Robaina @srobainae]

@tenerife_meteo ¡Una pasada de cielo! (Güímar, Tenerife)

[Fungal & Biogeochemical Oceanography @FBOceanography]

We are excited to see that our latest paper in @NatureMicrobiol is featured in the cover! https://t.co/r4vzXY9QYg Thanks!

[Semidán Robaina @srobainae]

Prochlorococcus, likely the most abundant photosynthetic organism, thrives in tropical ocean waters. Our recent research delves into its transcriptional responses to temp. Key insights for a warming ocean. #Marinebiology #Bioinformatics #MicrobialEcology

https://t.co/qvG3OW49Vi

[pyOpenSci ( @[email protected] ) @pyOpenSci]

🔥 Don't miss out on tomorrow's amazing talk by @leahawasser at the #Python in Heliophysics Community meeting!

🗓️ Join us at 9:30 AM MT for an inspiring discussion on "Diverse Community Around the Open Tools that Drive #OpenScience." 🌍

💡Learn more: https://t.co/GsLXcQsO9L

[Andrew McCarthy @AJamesMcCarthy]

Due to the volume of people asking- I wanted to illustrate where you can find the Apollo landing sites on my GigaMoon image- complete with zooming down to see the landers

[ValleyDAO @valley_dao]

What is ValleyDAO?🤷🏾‍♂️

1/ ValleyDAO is a community of scientists, entrepreneurs and enthusiasts bringing synthetic biology (SynBio) to the people.🔥🧫🌱

[Semidán Robaina @srobainae]

Glad to see our work finally published! It's been a long but passionate journey learning about the wonders of a group of bacteria (our "el grupito") in the deep ocean. #metagenomics #deepocean #bioinformatics

[José M. González @jmglezh]

The result of a nice collaboration with friends at @FBoceanography on sulfur-oxidizers in the deep ocean https://t.co/wVSJ2EcUh1. We need to do this again soon!