Matt McCormick @[email protected]

🧑‍🔬 Research Software Engineer
❤️‍🔥 Open Science Champion
🕸️ ITK / SciPy / DeSci / Web3 / Wasm
🫶 Bluegrass lover / Catholic
😊 Husband / Father

[Matt McCormick @[email protected] @thewtex]

📷 **Join the 3rd Get Your Brain Together Hackathon!**

Our focus: advancing **OME-Zarr spatial transformations**!

More: https://t.co/x472ZKKkDS

[Matt McCormick @[email protected] @thewtex]

Insight Toolkit (ITK) 5.4 Release Candidate 4

ALL THE DICOMs

is available for testing! 🎉

https://t.co/Tg7MdCoqbM

[Matt McCormick @[email protected] @thewtex]

https://t.co/WtvetaXANK

[Matt McCormick @[email protected] @thewtex]

#ITK 5.4 RC 2 is out, with Web3 testing data support #Sustainability
Built with @IPFS @Web3Storage @pinatacloud @datalad @ImJoyTeam @fleekxyz #cmake

[NumFOCUS @NumFOCUS]

Join us at the ONLINE Insight Toolkit (ITK) Hackathon on November 8! 👾

Meet the devs, collaborate with the scientific image-processing community, and take your first steps with the ITK and open-source! 🧠

More Info: https://t.co/YkisMvQlA9
Sign-up!: https://t.co/0SEOFrFs7h

[Matt McCormick @[email protected] @thewtex]

On sustainable scientific testing data with #web3 technologies at the @NumFOCUS Summit

https://t.co/OXQcexvITG

#ipfs #openscience #desci #sustainability #cxx #python #javascript

[Josh Moore @notjustmoore]

Out now! "#OMEZarr: a #CloudOptimized #BioImaging #FileFormat with Int'l #Community Support" 😍

Huge thanks to the 68 co-authors, across 32 institutions (see the quoted tweet) 🙌

If you use #OMEZarr & weren't involved, let's start the next report! 📝

https://t.co/iSFOr3RYYU

[Luca Marconato @LucaMarconato2]

1/9 Excited to share #SpatiaData, a framework for representing spatially-resolved omics technologies. Great colab w/ @g_palla1 @ky396 @ivirshup @HeidariElyas @TreisTim Marcella @rahulbshrestha @harald_voeh @wolfgangkhuber @MoritzGerstung @notjustmoore @fabian_theis @OliverStegle

[Matt McCormick @[email protected] @thewtex]

Want to learn the fundamentals of Zarr and OME-Zarr NGFF? Take these new interactive tutorials, operating on whole-brain lightsheet volumes from the Allen Insitute for Neural Dynamics

https://t.co/sFtKXicPGI

#zarr #ngff @dyfbrian @zarr_dev @openmicroscopy

[Matt McCormick @[email protected] @thewtex]

See those AI labels in 3D

[Matt McCormick @[email protected] @thewtex]

New post on intuitive visualizations and cloud resources for medical imaging research with #itkwidgets on @CancerIDC https://t.co/vb18amDHC9

[Matt McCormick @[email protected] @thewtex]

window/level interaction mode 🪟🎚️

[Henry Schreiner III @HenrySchreiner3]

Next Scikit-build Community Meeting tomorrow (Friday may 19) at 12:00 PM EDT https://t.co/BMJ7mqkw8I - we'll be covering an analysis of a few hundred projects using scikit-build, the setuptools replacement work, and more!

[Matt McCormick @[email protected] @thewtex]

@Siemens recently released an Open Source Manifesto: https://t.co/u36rrXpaWm 👏☕️ It is an admirable guide on how to be a responsible corporate citizen in the Computational Age.

[Matt McCormick @[email protected] @thewtex]

and Best Practices for Communication of Project, Resources, Governance, and Culture

https://t.co/65PMUM1Buy

[Matt McCormick @[email protected] @thewtex]

New post on Scientific Software Sustainability in Action with the @UUtah Cleaver multi-material mesher and @thehiddenbrain

https://t.co/ShrRNrmJo0

[Matt McCormick @[email protected] @thewtex]

Built in the context of discussions on Scientific Software Process for the Web

https://t.co/KWoPsaiQ1A

[Matt McCormick @[email protected] @thewtex]

This hackathon is hosted by the @AllenInstitute with sponsorship from @NumFOCUS @BioTranslucence and support from @NIMHgov @Kitware

[Matt McCormick @[email protected] @thewtex]

Join us at the second Get Your Brain Together neuroimage registration hackathon 🧠This community collaboration aims to create reproducible, open source resources that enable discovery of the structure and function of brains.
https://t.co/Gx7Jedvfnl

[Matt McCormick @[email protected] @thewtex]

The Get Your Brain Together hackathons bring together neuroimage data generators, image registration researchers, and neurodata compute infrastructure providers for a hands-on, collaborative event. 🤝