Tom Herold

Focussed on AI for BioTech.

Co-Founder @scalableminds building @webknossos

[WEBKNOSSOS @webknossos]

Check out our complete workflow video for imaging facilities 🎥 ! Upload, align, analyze, and share your vEM data with WEBKNOSSOS.

Get started for free at https://t.co/0wSoQOZ6QT!

[Crick BioImage Analysis Symposium @The_CBIAS]

@jobragantini @czbiohub @ThePSF @martweig @EPFL Our first tech bite:
@webknossos: AI-assisted, collaborative annotation and sharing of large 3D images

by Norman Rzepka - Scaleable Minds @scalableminds

#dataAnalysis #science

[WEBKNOSSOS @webknossos]

🎉 To celebrate ZEP2's approval, we baked up something special! Thanks to all for making this milestone possible! @zarr_dev 🍰

[WEBKNOSSOS @webknossos]

New feature 🐣 4D datasets for time series!

You can now not only view your data in 3D but also in 4D, adding the element of time. It works for visualization as well as for annotation. Any feedback is welcome!!

Try it out on this dataset: https://t.co/jSuLHtu7fU

[WEBKNOSSOS @webknossos]

Exciting news! ✨🐣

We just released a new AI-based quick segment feature in WEBKNOSSOS! The new feature is powered by @MetaAI's Segment Anything Model. Simply draw a bounding box to automatically segment complex objects. 🚀

Try it now on https://t.co/0wSoQOZ6QT for free!

[Tom Herold @tom_herold]

I am excited to showcase @webknossos at the @NEUBIAS_ symposium today.

[Tom Herold @tom_herold]

I am really proud of the @webknossos team for the awesome and playful rebranding. Thanks to everybody for chipping in.
Let's continue to build great tools for the next generation of scientists!

[WEBKNOSSOS @webknossos]

We are thrilled to share with you the redesigned WEBKNOSSOS brand!

Our new branding reflects our commitment to science, innovation and excellence. We hope you will like the new look!

[WEBKNOSSOS @webknossos]

Let's reconstruct some more fruits in 3D: we present to you a FIG acquired with array tomography and a TOMATO acquired with SBEM.

Enjoy!

Links to the datasets:
https://t.co/1PAL29Z5NU
https://t.co/GDKUZIhp5i

[WEBKNOSSOS @webknossos]

This is a kiwi fruit. Reconstructed in 3D from serial block-face electron microscopy (sort of).

Check out the 3D dataset! https://t.co/SkI8f0K5nh

[WEBKNOSSOS @webknossos]

🐣 New feature 🐣

From now on, you can change and set the color of a segment ID. Make your cells blue, pink… even black or white! This can be really useful, for example, if the random colors of your segmentation make it hard to differentiate cells.

[WEBKNOSSOS @webknossos]

Coming soon ✨! Watershed feature

You know how long it lasts to brush a cell and not go beyond its membrane… Well, this is over!

With the new intensity-based seeded watershed tool in webKnossos, all you have to do is to box select a cell - and webKnossos will fill it for you.

[Tom Herold @tom_herold]

@webknossos @charlesstern @zarr_dev @charlesstern There is more information available in the documentation of the webKnossos Python library including a longer example:
https://t.co/hOnCZR6Drm

[Tom Herold @tom_herold]

@sparta3d Hi, all my accent parts were printed in you sparkle ABS+ Fluorescent Blue when buying through PIF. Beautiful color. Do you have a locale warehouse/wholesale partner in Europe/Germany? Shipping from Canada is not really economical. Thx

[Moritz Helmstaedter @mh_lab]

What makes us human, at the neuronal network level? We discovered a dramatic (10-fold) expansion of interneuron-to-interneuron networks in the human brain compared to mouse: just published in @ScienceMagazine @MpiBrain @maxplanckpress https://t.co/eRYZyDyKVz

[Euro-BioImaging Industry Board @EBIB_imaging]

Today at 2pm! Tom Herold from @scalableminds will give an interactive walkthrough through the main features and applications of webKnossos. #TechExchange #imagedata #datasharing
https://t.co/qsvv8scqQK

[Tom Herold @tom_herold]

@webknossos I look forward to today's webinar on using @webknossos for analysis of microscopy image. Interested to learn how to integrate it with machine learning models and advanced workflows.

[Norman Rzepka 🇺🇦 @normanrz]

#CBIAS2021 finally starts today! I'm excited to be presenting a poster about @webknossos (poster hall 2, poster no. 37).

[WEBKNOSSOS @webknossos]

Did you ever wonder which steps lead to a full neuron reconstruction? In his blog post, @tom_herold explains everything from the alignment of the raw data to the connectome generation. https://t.co/Cw6f0J2klO

#Connectomics #ImageAnalysis

[Tom Herold @tom_herold]

Meet us at our first webKnossos office hours to learn more about 3D meshes and do a community Q&A. Monday August 2nd @ 10AM and 5PM.

[WEBKNOSSOS @webknossos]

Join us for the first webKnossos office hours on August 2nd. We will demo some of the new features and answer any questions from you. There are 2 time slots available to accommodate different time zones.
Sign up here: https://t.co/fuOnT0KsJd

[WEBKNOSSOS @webknossos]

Render your meshes with your favorite tool. Choose a loaded mesh in the "Meshes" tab, then download it in STL. Import it into your rendering software (such as Blender or Amira) and let your graphic skills shine!

Read more: https://t.co/StZ07wURmF