vivek raxwal

passion for science and cricket 🏏,

[vivek raxwal @vivekraxwal]

What a week, two historic moments and two champagne 😅. @BrnoCricket won the first cricket Championship in Division 1. Proud of you boys

[Deyang Xu @DeyangXu_CN]

Mapping the zygote-to-adult developmental cell phylogeny in Arabidopsis thaliana reveals a three-cell rule of branching
https://t.co/DBanZaoOS8

[Jorge Ferreira (@jorgeferreira.bsky.social) @Jor_Ferreir]

Really proud to share our latest work @embojournal. This was a long, joint effort from everyone in the lab (some of which have since left). Here, we looked at out how cells decide when to divide.
https://t.co/pf0X6V23nv

[Trends in Genetics @TrendsGenetics]

Beyond housekeeping: snRNA diversity, regulation, and human disease https://t.co/BHR5RCsBOb

[nature @Nature]

Nature research paper: Alternate RNA decoding results in stable and abundant proteins in mammals

https://t.co/VsT4bqV3T5

[Brian Hie @BrianHie]

In new work, we lay out a vision for a high-level programming language for generative biology, called Proto.

Proto composes generative and predictive models spanning DNA, RNA, proteins, ligands, and their interactions, which we use to design complex biological functions. 1/n

[ぴーちゃん @peechan1970]

植物は病原菌を感知すると免疫を起動する。本研究は、EDS1・PAD4というタンパク質が高度な免疫だけでなく初期防御にも重要であることを発見。さらに、防御には「即時対応」と「持続的な抵抗力づくり」の2段階があり、異なる分子が働くことを示した。PNAS
https://t.co/aosKHh1gRH

[marek mutwil 🇺🇦 @LabMutwil]

🌱 Gene expression & co-expression across 630,000 RNA-seq samples from 10,700+ plant species — free, in your browser.

Search a gene → see where it's expressed on the UMAP → explore its co-expression network.

https://t.co/PRhoLXBs2o

#PlantScience #RNAseq #Bioinformatics

[Frederik Schulz @frederikschu]

Fine-tuned DNA language models improved de novo gene annotation over existing tools and generalized to species far outside the training set. Pretrained DNA language model embeddings alone did not capture the features needed for precise gene segmentation. The study also introduces biologically grounded benchmarks for gene models, UTRs, and non-coding transcripts. https://t.co/j8HQSxMVrD

[Eden @EdenChang_]

Excited to share our new bioRxiv preprint!

We introduce RIPPLE, a synthetic platform that couples reaction–diffusion circuits with protein condensation to generate tunable sub-cellular architectures.

I’m deeply grateful to @MaggieXzj and @CellRaiser_ for their mentorship, collaboration, and support throughout this project. It has been a long but incredibly rewarding journey.
https://t.co/2vLVvMmF2S

[Gene-Wei Li Lab @GeneWeiLiLab]

We're excited to share our latest publication, from graduate student Julia Dierksheide in the lab! In B. subtilis, the fast-moving RNA polymerase outpaces the leading ribosome, leaving mRNA transcripts vulnerable to the transcription termination factor Rho. (1/2)

[Trends in Genetics @TrendsGenetics]

Co-transcriptional splicing: Distinct phases, mutual benefits, and basis for nuclear architecture https://t.co/cB25HHUJwW

[Deyang Xu @DeyangXu_CN]

Cold-induced peptide signalling secures pollen resilience and crop yield @Nature
https://t.co/qrzxwM4Qyf

[Morgan Levine @DrMorganLevine]

So, can we all agree to stop just scaling up scRNA-seq now? Thanks!

[Oded Rechavi @OdedRechavi]

A PhD's success depends more on the fit between the student, the advisor, and the lab than on the specific topic being studied (it barely matters at all).

Similarly, a lab's success depends more on how excited (or miserable) its researchers are than on the precise project they are working on (it could be virtually anything).

This information isn't in papers or in grant proposals, you have to ask the researchers.

[Molecular Cell @MolecularCell]

In vivo single-cell ribosome profiling reveals cell-type-specific translational programs during aging https://t.co/y1UlM1mE1m

[ShorterLab @ShorterLab]

Deep learning of functional perturbations from condensate morphology: Cell https://t.co/VRDIUQXPAq

[Plant Science @sci_plant]

Mapping the zygote-to-adult developmental cell phylogeny in Arabidopsis thaliana reveals a three-cell rule of branching

https://t.co/abLHRIcyBi
♻️

[Mauricio Contreras @mpcontreras4]

Molecular mimicry of a pathogen virulence target by a plant immune receptor | Science https://t.co/bOl57aHZ8V

[ShorterLab @ShorterLab]

Kinase condensates enrich ATP and trigger autophosphorylation: Cell Reports https://t.co/1Kv5F8HaJx

[antisense. @razoralign]

FIRST-seq: a nanopore-based cDNA sequencing platform for RNA modification and structure profiling https://t.co/wBJssxUib5