Exciting news! #SAGE is now integrated into https://t.co/MGeFj29ONg, thanks to the amazing @OpenMSTeam and @michaellazear.
Joining COMET (The STABLE) and MSGF (the Deeper), SAGE brings its speed, efficiency, and youthful vibe to #quantms. Let's celebrate at #HUPO2023! 🎉
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉
Watch now on YouTube: https://t.co/Qzmbl3v1mT
Our paper "Automated Discovery of Container Executables" is published in the Journal of Open Research Software! 👉 https://t.co/e4GJRD3HPC. This was fun work with @MarcoDeLa83 and Audrey Stott from @PawseyCentre , @mathgeorgia, and Matthieu Muffato of @sangerinstitute.
We created automated pipelines that would not only discover new @BioContainers to add to our online registry, but also executables of interest inside! Our journey included new software, databases, and automation to help developers maintain their own registries. Each of these...
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab@OpenMSTeam@nf_core teams.
Time for release 🚀. Let me introduce you to the PRIDE Archive USI Viewer @pride_ebi https://t.co/12KNeFoX6n. A Spectrum Viewer for every MS in PRIDE Archive. 🧵
Hi there. Today we have written a full tutorial about how to download data from @pride_ebi (https://t.co/qJ8oggSnlJ). We have now 4 options: https, FTP, Aspera, and the new streaming service. 🧵
I'm so happy today. An open-source, community project I have been contributing for so long from the begining continues flying high. https://t.co/kXmi7yLn8I
Really excited to announce this one - we've been working with the @BioContainers group to make all of their images available on ECR Public Gallery. This means that bioinformatics containers will not be subject to throttling on AWS. Nice.
https://t.co/7EbzxsaxsK
Shoutout to @BioContainers for making computing on the cloud easy 😀
More biologist should be using containerized software, and more trainees should be taught how to use it. (or learn on their own)