BioContainers

A community-driven project to create and manage bioinformatics software containers

[BioContainers @BioContainers]

@idvb87 We fixed the error, should be working now

[Yasset Perez-Riverol @ypriverol]

Exciting news! #SAGE is now integrated into https://t.co/MGeFj29ONg, thanks to the amazing @OpenMSTeam and @michaellazear.

Joining COMET (The STABLE) and MSGF (the Deeper), SAGE brings its speed, efficiency, and youthful vibe to #quantms. Let's celebrate at #HUPO2023! 🎉

[ELIXIR Europe @ELIXIREurope]

✨ In 2022, there is a total of 496 services within #ELIXIR. Including:
#LSLogin #ELIXIRAAI @FAIRsharing_org #ELIXIRTeSS @BioContainers #BioTools

👀 Find out more in our 2022 annual report: https://t.co/gb35PUmHj5

[Yasset Perez-Riverol @ypriverol]

#quantms is now a #preprint. quantms: A cloud-based pipeline for #proteomics reanalysis enables the quantification of 17521 proteins in 9,502 human samples. https://t.co/DzjIABqC20 Thanks to @OpenMSTeam @DemichevLab, @nf_core, @BioContainers, #BioConda and @nextflowio team’s. 🧵

[Evan Floden @EvanFloden]

Very excited to partner with Genomics England on this one.

[Phil Ewels @tallphil]

Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉

Watch now on YouTube: https://t.co/Qzmbl3v1mT

[V @vsoch]

Our paper "Automated Discovery of Container Executables" is published in the Journal of Open Research Software! 👉 https://t.co/e4GJRD3HPC. This was fun work with @MarcoDeLa83 and Audrey Stott from @PawseyCentre , @mathgeorgia, and Matthieu Muffato of @sangerinstitute.

[V @vsoch]

We created automated pipelines that would not only discover new @BioContainers to add to our online registry, but also executables of interest inside! Our journey included new software, databases, and automation to help developers maintain their own registries. Each of these...

[Yasset Perez-Riverol @ypriverol]

Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.

[Yasset Perez-Riverol @ypriverol]

Time for release 🚀. Let me introduce you to the PRIDE Archive USI Viewer @pride_ebi https://t.co/12KNeFoX6n. A Spectrum Viewer for every MS in PRIDE Archive. 🧵

[Yasset Perez-Riverol @ypriverol]

Hi there. Today we have written a full tutorial about how to download data from @pride_ebi (https://t.co/qJ8oggSnlJ). We have now 4 options: https, FTP, Aspera, and the new streaming service. 🧵

[Yasset Perez-Riverol @ypriverol]

Would you be interest in a introduction paper about how to use AI tools like Github Copilot in Bioinformatics software development?

[Yasset Perez-Riverol @ypriverol]

I'm so happy today. An open-source, community project I have been contributing for so long from the begining continues flying high. https://t.co/kXmi7yLn8I

[Toni Hermoso Pulido @toniher]

Announcement at #NextflowSummit - @BioContainers available in ECR @awscloud #container registry https://t.co/ihsDRI6Up8

[Angel @delagoya]

Really excited to announce this one - we've been working with the @BioContainers group to make all of their images available on ECR Public Gallery. This means that bioinformatics containers will not be subject to throttling on AWS. Nice.
https://t.co/7EbzxsaxsK

[Alex Weitzel @AlexJohnWeitzel]

Shoutout to @BioContainers for making computing on the cloud easy 😀

More biologist should be using containerized software, and more trainees should be taught how to use it. (or learn on their own)

[Yasset Perez-Riverol @ypriverol]

If you want to learn about the three leading cloud solutions for proteomics data analysis, make sure you register for this workshop. @galaxyproject #TPP @nextflowio #quantms https://t.co/c39dU4lT7H #Proteomics #MSProteomics #Cloud

[Robert A. Petit III, PhD @rpetit3]

Friendly reminder every tool submitted to Bioconda also gets a Docker container from @BioContainers and a Singularity image from @galaxyproject

[Proteomics @proteomics]

The @MyABRF Cloud Computing Workshop Registration is Now Open: https://t.co/034RU140eg
#nextflow #TransProteomicPipeline #usegalaxy

[Charlotte Capitanchik 🌙 @tiny_captain]

Making @BioContainers compatible with M1 Mac ARM architecture is really important for my work going forwards -- anyone else? https://t.co/iWQNlqyQAw