Clara Alsinet Armengol

In science for the ‘That’s funny...’ moments. Continuing the fascinating single cell path I started at the @sangerinstitute then @cnag_eu and now @AstraZeneca

[Clara Alsinet Armengol @ClaraAlsinet]

1/6
If you are not convinced, yet 😉, of how amazing induced pluripotent stem cells are, have a look at our latest work on human iPSC differentiation to myeloid cells now out in @NatureComms. @sangerinstitute @OpenTargets #singlecell #HumanCellAtlas https://t.co/piAx3vUQT9

[antisense. @razoralign]

CeLLTra: Aligning Cell Names with Gene Expression via a Pathway-Informed Transformer https://t.co/LNkl7L9PMc

[Grant Challen @challenlab]

Please check out or new paper describing a novel relationship between DNMT3A and telomeres. It truly was a team effort !

Even better when your former @Goodell_Lab baymate @TheKingLab publishes in @CellStemCell in the same issue!

[Clara Alsinet Armengol @ClaraAlsinet]

@RespectfulMemes If you know that 2 quarters (2/4) are half a dollar (1/2) you know how to reduce a fraction

[Erick Armingol @eagut]

I’m happy to share that our scCellFie manuscript is finally on bioRxiv — a project that was an amazing opportunity to return to my roots in metabolism!
We infer metabolic activity from single-cell & spatial transcriptomics 🧬
Read the pre-print here👇
📄 https://t.co/u1Al0Ot3Wo

[Ming "Tommy" Tang @tangming2005]

1/ You have a clear question:
Is gene A and gene B co-expressed in my cell type of interest?
You feel ready.
You have single-cell data.

[Ming "Tommy" Tang @tangming2005]

7 Books for you to learn bioinformatics 🧵 👇

[Ajay Nadig @NadigAjay]

How do genetic perturbations change cells? How are these effects shaped by cell type and dosage? How do we best extract insight from modern massive perturbation atlases? Im pleased to share a new preprint where we develop a suite of statistical approaches to these Qs (link below)

[Jeremy Farrar @JeremyFarrar]

Twenty years of genome-wide association studies. Always worth reading ⁦@EleZeggini⁩ https://t.co/gU7noiEgxl

[Ming "Tommy" Tang @tangming2005]

Deciphering T-cell exhaustion in the tumor microenvironment: paving the way for innovative solid tumor therapies https://t.co/DIJB450tjy

[KelvinTuong @KelvinTuong]

CellPhoneDB v5 is officially published!
https://t.co/gsGRTokngA

Very happy to have played a small role in it by developing some tools to help visualise the complex cell-cell interaction data!

[ISGlobal @ISGLOBALorg]

📈💉 Since @Gavi’s inception in 2000, they have helped immunise more than 1.1 BILLION children around the world, averting >18.8 MILLION deaths.

💵🌎We call on donors to invest vital funding to build on this progress.

#ForOurFuture #VaccinesWork #HumanlyPossible #GlobalHealth
https://t.co/p2ffsKRdJq

[Altuna Akalin @AltunaAkalin]

𝐟𝐥𝐞𝐱𝐲𝐧𝐞𝐬𝐢𝐬, our new deep learning-based data integration tool for multi-omics.
1000s of deep learning workflows are available.

Paper: https://t.co/1yTHcPhPVm

Code: https://t.co/ObYfBGsucA

Benchmarks: https://t.co/puQlbsypwP

Tutorial/docs: https://t.co/hAPbdWvdtL

[Lior Pachter @lpachter]

The mantra that spatial transcriptomics is about location, location, location is catchy, but what does it really mean? We have just posted https://t.co/oE9X6dHIko, work of Kayla Jackson et al., that describes the concordex method for identifying spatial homogeneous regions. 1/🧵

[CNAG @cnag_eu]

🏅 Today, Sergio Aguilar (@saguilarfer) successfully defended his #PhD Thesis

➡️Deciphering B lymphocyte dynamics in health and disease through the integrative analysis of multi-modal single-cell data

🧑‍🔬Thesis supervisors: Ivo Gut and @hoheyn

🙌Many congratulations!!!
#CNAG

[Cell @CellCellPress]

Now online! Phospholipids with two polyunsaturated fatty acyl tails promote ferroptosis https://t.co/cZcXlyzU3t

[antisense. @razoralign]

SATURN: Towards Universal Cell Embeddings: Integrating Single-cell RNA-seq Datasets across Species https://t.co/fJST7ucxXL

[Cell @CellCellPress]

Now online! Pan-cancer proteogenomics characterization of tumor immunity https://t.co/WayPswbPiT

[CNAG @cnag_eu]

📢#ScientificTalk: 07 November at @PCB_UB! (10am)

🧪Discover the latest immunogenomic #research and the key differences between primary and metastatic #tumors

🗣️@fran_mj88, Group Leader at @VHIO & Data Mining lead at @HartwigMedical

📍Fèlix Serratosa
ℹ️https://t.co/xzj5WukBIv

[CNAG @cnag_eu]

📢12th CNAG Symposium on Genome Research: State-of-the-art genomics

🧬Discover the latest innovations and amazing applications in #personalisedmedicine & #Biology

👉12 December 2023
🗣️12 international speakers
📍Barcelona, Spain

📩Register now! (free): https://t.co/X7dM8JpItH

[Ramon Massoni Badosa @rmassonix]

The Tonsil Atlas 2.0 is now available through my first BioConductor package: HCATonsilData!

https://t.co/B0LvyuzZXe

In the revision , we have included 7 additional donors (adults), doubled the number of cells, and validated annotations. Here's how you can access all datasets👇