Wayne

Wayne ~~ ~Jupyter Distinguished Contributor~ ~ ~ ~ ~ ~ ~ ~ ~ I run Proteopedia's social media too ~~ ~He/His

[Wayne @Fomightez]

@pawjast You can use this link and it will start the MyBinder session with the copy in my gist automatically (patience may be needed): https://t.co/sicVYd1evH

[Wayne @Fomightez]

@pawjast For modern Jupyter, you are looking for `%matplotlib ipympl`. See https://t.co/i0r5gkaR4X for more about that backend. Updated in https://t.co/9JkjrLZHNu that will work in sessions launched from https://t.co/rSBZYq26gT

[Wayne @Fomightez]

@nooriefyi @jtpio You may be interested in https://t.co/NOhjlx2PYx . Example app: https://t.co/gMiSppJhxk The documentation goes through a step-by-step at https://t.co/hMBXBLNR8g

[Chris Holdgraf @choldgraf]

I'm excited to get Binder / JupyterHub launch button functionality back into Jupyter Book 2!

Gets a little better every day!

https://t.co/otOV8UZKki

[Project Jupyter @ProjectJupyter]

Project Jupyter is thrilled to share the news about the Jupyter Foundation! #jupyter #jupyterfoundation #opensource

[Wayne @Fomightez]

@bicknell_l @ppgardne There was an earlier mention that, at least for RNU4-2, it was this 'whole' exome approach not being whole. My impression from the statement at https://t.co/jHUuZad1Y1 was that it wasn't covered in the exome sequencing despite being in a conserved exon.

[Nicky Whiffin @nickywhiffin]

But finally to highlight that this region, despite being within a highly conserved exon is not covered in ‘whole’ exome sequencing (as it is a non-coding RNA). This is a clear example of the power of genome sequencing to uncover novel diagnoses for patients. 9/9

[Maarten A. Breddels @maartenbreddels]

This is super cool: a full Python app and LLM running in the browser at @py_cafe

[Wayne @Fomightez]

@jtpio The better launch link would be https://t.co/pAZnExEFxZ so tutorial presented. However, `/usr/share/dict/` is empty in launched session so that notebook fails to generate to generate a thousand more files in the notebook tree.

[Niels Fischer @N__Fischer]

How does the human #ribosome machinery select an open reading frame on mRNA for translation? Check out our #cryoEM work @NatureSMB: https://t.co/GC2xgcMcez

Thanks to all involved - most of all first author @V_Petrychenko and our collaborators from the Rodnina lab @mpi_nat. 1/5

[Beckmann Lab @BeckmannLab]

First structure of a H/ACA snoRNP acting in ribosome synthesis. In a great collaboration with the Hurt lab, we provide a detailed structural and biochemical view of the snR30 snoRNP guiding local 18S rRNA subdomain folding. 👇👇👇

[2i2c @2i2c_org]

We're thrilled to share an update about our continued collaboration with @developmentseed on the @NASA Visualization, Exploration and Data Analysis (VEDA) platform! See how we've made it easier for researchers to explore large geospatial datasets 🌍 https://t.co/KO7LWoefeK

[Quansight @quansightai]

🥳 Exciting news! You can now experiment with free-threaded Python! 🐍 This major change to CPython allows running multiple threads in parallel for better performance on modern CPUs. Check out Quansight Labs' blog to learn more and get started! 👀 https://t.co/Dw90Uu2Wxu #python

[Janet Iwasa @janetiwasa]

The Animation Lab is hiring! We're looking for a software developer for an exciting new project creating intuitive tools for molecular animation. Experience with Python req'd and Blender preferred. Please forward to any interested folks! https://t.co/Xck1B2lkkt

[Joshua Mendell @Mendell_lab]

I am excited to share this story led by Yujing Cheng and Siwen Wang (not on X) in @CellCellPress which describes a new function for a small nucleolar RNA (snoRNA) in senescence and ribosome biogenesis. Read on for a brief 🧵1/
https://t.co/w42k4u5pox

[SGD Project @[email protected] (bsky too) @yeastgenome]

YeastMine is closing July 15 due to ongoing funding cuts. For more info: https://t.co/FagOTFOtRW #yeast

[Sam Sternberg @shsternberg]

Did you see the bridge RNA papers yesterday? Bacterial transposons promote programmable, RNA-guided DNA recombination.

Remarkably, we found that the recombinase was co-opted in archaea and eukaryotes for widspread RNA-guided RNA modification, an essential function in humans!

[Wayne @Fomightez]

"In this first map of pseudouridine modifications for C. elegans, we find that they largely reside in coding sequences and that the number of genes with this modification increases with age."

[Robert Haase @haesleinhuepf]

It was a pleasure presenting at my first @Sca_DS.AI #SummerSchool! I spoke about #LLMs for #BioImageAnalysis, including best-practices for prompt-engineering, LLM fine-tuning, RAGs and benchmarking. 🔬💻🚀🔓
Slides #openaccess: https://t.co/BVxCqcUp3S

[Project Jupyter @ProjectJupyter]

🎉 Great news for the #GIS and #Jupyter communities! The @ESA is funding a project by @QuantStack and @simula_research to bring collaborative editing to GIS workflows in JupyterLab. Let's explore new ways of working with geospatial data! 🚀 https://t.co/LGtjSVNHgo

[Jochem Smit @Jhsmit_]

Here is another fun one over on @py_cafe ☕️

Protein residue coloring in ipymolstar is now super fast with the latest PDBeMolstar version.

Makes for very responsive protein viewer apps!
And supports dark mode 😎