GW_HIVE_Lab

The GW HIVE Lab is an academic lab headed by @rmazumde in the Department of Biochemistry and Molecular Medicine at the George Washington University.

[GW_HIVE_Lab @GW_HIVE_Lab]

HIVE Lab has a fantastic group of interns this summer! Special thanks from GWU for all your hard work. Excited to see what's next for these young scientists!

[IEEE Standards Association | IEEE SA @IEEESA]

Listen to ep. 1 of #IEEESAVoice Re-Think Health Podcast series w/ @rmazumde and @NeuroGenomics about real-world benefits and use cases of #IEEE2791-2020 in facilitating expedited bioinformatics communications exchange protocol in bio/clinical research. https://t.co/sTUUdSVX65

[GW_HIVE_Lab @GW_HIVE_Lab]

Learn how to leverage #BioComputeObjects for #NGSAnalysis accompanying regulatory submissions

[BioCompute @BioComputeObj]

Our preprint is out now! A how-to guide on #BioComputeObjects accompanying submissions to the @FDA.

This proof-of-concept demonstrates how "...to effectively capture and clearly communicate NGS analyses within regulatory submissions"

https://t.co/MGWW1ugjY1

[GW_HIVE_Lab @GW_HIVE_Lab]

Find out how to perform #MachineLearning analysis on #Metagenomics data in Matlab with the #Microbiome team at #GWHiveLab here: https://t.co/9nd5kNuJbK

[GW_HIVE_Lab @GW_HIVE_Lab]

Read on to learn more about the @BioComputeObj standard for communicating #DataAnalysis pipelines

[bioRxiv @biorxivpreprint]

Strengthening the BioCompute Standard by Crowdsourcing on PrecisionFDA https://t.co/z0VqMPefKI #bioRxiv

[GW_HIVE_Lab @GW_HIVE_Lab]

ICYMI -- We present the sensitivity of a novel standalone algorithm for accurate identification of subpopulations & recombination patterns in chronic HIV-1 patient samples. #Bioinformatics #ViralGenomics #HIV https://t.co/o8X4MTp2n6

[GlyGen @gly_gen]

@gly_gen has now integrated protein to glycosylaminoglycan (GAGs) interaction data from #MatrixDB in collaboration with Sylvie Ricard-Blum. The data can be accessed through GlyGen-beta (https://t.co/UcM2nBK1km). Example https://t.co/Nq1aHOkX6b
@rmazumde
@flyglyco

[GW_HIVE_Lab @GW_HIVE_Lab]

Great 4 year collaboration culminating in an outstanding paper! 👏👏👏 #HIVRecombination #Algorithms #ViralGenomics #Bioinformatics

[NailaGulzar @binti_Sakeena]

We present a novel standalone algorithm for accurate and reliable identification of subpopulations & recombination patterns in chronic HIV-1 patient samples. It is important for drug resistance surveillance and vaccine development.
https://t.co/1OnKTEY2ky
@rmazumde @GW_HIVE_Lab

[GW_HIVE_Lab @GW_HIVE_Lab]

👏👏👏

[BioCompute @BioComputeObj]

Commisioner of @US_FDA, @SteveFDA, specifically mentions BioCompute during his opening address at the annual Scientific Computing Days!
https://t.co/oP83GSQ2tJ

[GW_HIVE_Lab @GW_HIVE_Lab]

There's still time to register for TODAY's noon workshop with @BioComputeObj!!

[@hadleyking.bsky.social @HadleyKingIV]

Happening today: @BioComputeObj will hold a workshop for ISB (@biocurator) "Methods for communicating provenance of data and analysis". Examples from @OncoMX_KB & @gly_gen #Database will be featured, as well as BCOs in @galaxyproject & @CberHive.
https://t.co/xLDUoh7dtm

[GW_HIVE_Lab @GW_HIVE_Lab]

10 days til the workshop on #BioComputeObjects for #DataProvenance tracking and communication, read below for registration details!

[BioCompute @BioComputeObj]

Save the date! 𝗦𝗲𝗽 𝟮𝟰 𝗮𝘁 𝟭𝟮𝗣𝗠 𝗘𝗦𝗧 Join us and @biocurator as we workshop Methods for Communicating Provenance of Data and Analysis in #biocuration. Workshop is free, registration is required. See https://t.co/ag8L9XaQAm #biocompute #usegalaxy

[OncoMX @OncoMX_KB]

Tune in to learn about #COVID19 #Biomarkers and other #CancerBiomarkers in #OncoMX!

[GW_HIVE_Lab @GW_HIVE_Lab]

A belated but no less sincere congratulations to long-time lab mate and friend, Dr. John Torcivia, who successfully completed his PhD earlier this month. The celebration will come, but for now a virtual #Cheers will have to do! 🥂 #Bioinformatics #CancerGenomics #CongratsDr

[GW Dept. of Biochemistry & Molecular Medicine @gwbmm]

Congrats to @syntheticgio a #BioInfoBiochem MS program alumni and PhD student in @rmazumde lab for a successful PhD dissertation defense titled "An Exploration of Cancer-Associated Non-Coding Variations in Whole Genome Sequencing Data". Kudos Dr. John Torcivia! @GWSMHS #PhDLife

[GW_HIVE_Lab @GW_HIVE_Lab]

Geneious demo this morning at 11AM - use contact details below to register! #Bioinformatics #RNASeq

[GW Dept. of Biochemistry & Molecular Medicine @gwbmm]

Next #GWMGPC Open House will be 2morrow 08-11 from 11-12:30am. #GWBMM faculty, post-docs, #GWBioinfoBiochem students are welcome. Demo of intro to RNA-seq analysis using Geneious and @BiocomputeObj enabled Galaxy on AWS. Contact @hadleykingIV for details.

[GW_HIVE_Lab @GW_HIVE_Lab]

https://t.co/hVb9dqwdOm

[@hadleyking.bsky.social @HadleyKingIV]

Presenting short talk & demo at #BCC2020! "Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations"
https://t.co/BreyilqxxE
Checkout our Galaxy Fork for the implementation:
https://t.co/zjvQwOe18F
@sched
@galaxyproject
@BioComputeObj

[GW SMHS @GWSMHS]

The BioCompute Object Specification Project, led by @rmazumde & @GW_HIVE_Lab at #GWSMHS, has been approved for publication as an internationally recognized standard by @IEEESA: https://t.co/vF4AFzTRFG

[GW_HIVE_Lab @GW_HIVE_Lab]

Check out the new paper from the #GlyGen team written by our @GWSMHS #HIVELab members and collaborators. #Glycoinformatics #DataIntegration #Glycobiology #Database #Knowledgebase

[GlyGen @gly_gen]

Check out our recent publication. GlyGen data model and processing workflow. https://t.co/p6WJT8SgpY Describes the GlyGen data model, processing workflow, and data access interfaces.
#glygen https://t.co/NTPilohfz3
@rmazumde
@flyglyco

[GW_HIVE_Lab @GW_HIVE_Lab]

We are proud to announce the release of the #GutFeelingKnowledgeBase v4.0 which includes #GutMicrobiome data from patients with therapy-resistant epilepsy, stats, and updated organism characteristics. Check it out! 👀 https://t.co/Jirrgbq3TS #Bioinformatics #DataIntegration

[GW_HIVE_Lab @GW_HIVE_Lab]

Happening NOW! Tune in to learn more about #BCO and other @NSF E-CAS updates #Bioinformatics #DataIntegration

[Galaxy Project @galaxyproject]

Online, in 24 hours: Development of BioCompute Objects for Integration into Galaxy in a Cloud Computing Environment https://t.co/FrM96kTt3u @BioComputeObj #UseGalaxy Part of by @Internet2 & @NSF E-CAS project