BioCompute

BioCompute is a community effort to standardize bioinformatic workflows, predominantly in #NGS.

[BioCompute @BioComputeObj]

Join us on May 10th at the @FDA, with @velseraofficial & @dnanexus for an impactful workshop. Register early to secure a spot for the free workshop that aims to widen adoption&usage of BCO within the regulatory context.
For more info & registration, visit:
https://t.co/nsWjdQIAgL

[BioCompute @BioComputeObj]

‼️Spread the word to those in the #bioinformatics world‼️We are announcing the Poster Session at the #BioCompute #Conference on May 10th!
Seeking poster abstracts about #computational #workflows & top 5 will give a lightning talk
More info here: https://t.co/3sWgnAVfFe

[BioCompute @BioComputeObj]

BioCompute is participating in @FDA Scientific Computing Days. Our video "Updates to #BioCompute Tools and Guidelines for Use" is posted at https://t.co/F45mihjckT
Please vote for us @ https://t.co/s2EN1KzABL

[BioCompute @BioComputeObj]

#BioComputeObjects will be attending the Common Fund Data Ecosystem (@cfdenih) Spring Meeting 2023 in Bethesda, MD this week. The team will be giving a lightning talk and presenting a poster on the #BioCompute-CFDE-WPP collaboration project.

[BioCompute @BioComputeObj]

Presented #BioComputeObjects & tools developed from @velseraofficial and @DNAnexus with the cross-industry Advanced Virus Detection Technologies Interest Group (AVDTIG) last week. If interested in a training session or a pilot study contact at https://t.co/qntLRvXbjQ

[BioCompute @BioComputeObj]

The #CFDE playbook partnership, which focuses on building integrated #tools and #databases with several CF DCCs, is using #BioComputeObjects to trace the playbook #workflows.

[BioCompute @BioComputeObj]

Could be some interesting things for #biocompute to come out of this as well!
👀
#glycoscience #BioComputeObjects #Bioinformatics

[GW Dept. of Biochemistry & Molecular Medicine @gwbmm]

Congratulations to Dr. Mazumder on his NIH OT award to study the Harmonization of GlyGen glycoconjugate and glycan array data for integration into CFDE. Way to go!!!

[GW Dept. of Biochemistry & Molecular Medicine @gwbmm]

We would like to share some great news! Drs. Mazumder and Kahsay have received an NIH R24 award for a study that will enhance the capability of GlyGen as a central resource for glycans and glycoconjugates and serve the biomedical research community. Congratulations Raja and Robel

[Ben Busby! @DCGenomics]

Hi! If you know anyone who is relatively new to bash scripting in bioinformatics, particularly if they want to use the advanced features of ⁦@dnanexus⁩ or #ukbrap, please point them to this site by my colleague ⁦@tladeras⁩ : https://t.co/XvPW4xM6JI

[BioCompute @BioComputeObj]

The #BCOnexus docker image is now available from https://t.co/lWkfKThEtF, which presents a graphical user interface for the import, parsing, and export of #BioComputeObjects from @dnanexus. Submission to the #BioCompute #API (https://t.co/DOdc1bHZHA) is also supported.#workflows

[Sergei Pond @sergeilkp]

Maybe someone/something has already done? Is there a list which matches GenBank SARS-CoV-2 consensus genomes with underlying SRA NGS files? Asking for a friend here.

[BioCompute @BioComputeObj]

If you missed the #BioCompute #workshop last week, the recording and slides can be found at https://t.co/opgfenWCe2

[precisionFDA @precisionfda]

Learn more about new tools to author and submit BioCompute Objects (BCOs) in a 9/13 webinar starting at 10:30 A.M. Register today at: https://t.co/WRzDAQ1Z8h

[BioCompute @BioComputeObj]

The #biocompute workshop will be held next Tuesday, Sept 13th. Introducing New Tools for Building #biocomputeObjects on @dnanexus, @SevenBridges, and @galaxyproject for deposit to the public access-controlled BioComputeDB. Please register at https://t.co/yy55pZZTSh

[@hadleyking.bsky.social @HadleyKingIV]

Tools from @SevenBridges @dnanexus and @galaxyproject will be featured!
#BioCompute #BioComputeObjects

[BioCompute @BioComputeObj]

A new BioCompute workshop will be held on September 13th via WebEx! Learn how to create BCO records from your #workflows directly on popular #bioinformatics platforms, and how to deposit them into an access-controlled database.
Please register here: https://t.co/yy55pZZTSh

[BioCompute @BioComputeObj]

"Communicating regulatory high-throughput sequencing data using BioCompute Objects"
A project that was more than 4 years in the making!

Shout out to @HadleyKingIV, @NeuroGenomics, @Snehby, @JPat1546, @rmazumde from @GWSMHS and @viralnerd

https://t.co/KMNHBmbJE8

[GW Dept. of Biochemistry & Molecular Medicine @gwbmm]

Interested in bioinformatics, knowledgebases and algorithm development? Come work with us in DC (remote work also possible) https://t.co/F8zXrfzahy

[GW SMHS @GWSMHS]

A consortium led by @GW_HIVE_Lab, @rmazumde, and @Embleema, with @TempleUniv, has received @FDA funding to advance the work against #infectiousdiseases. Read more: https://t.co/Mnmwd2wif8 via @TheVDT