Common Fund Data Ecosystem

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse

[Surya Saha 🧬⚙️👨‍💻📊 @SahaSurya]

Video by the @adamcresnick team demonstrating an application describing cross-DCC analysis with GTEx data
#CFDE #GA4GH
https://t.co/lIpJXdEt6a

https://t.co/RRsSIZMkkc

[Surya Saha 🧬⚙️👨‍💻📊 @SahaSurya]

A practical manifest based solution for file transfer using the #GA4GH #DRS standard presented at the recent Plenary meeting. Feedback welcome!!
#SevenBridges #Cavatica #CFDE
https://t.co/vrdlZWJ9BO

[Common Fund Data Ecosystem @CfdeNih]

If you are interested in using LINCS datasets and tools, this is an excellent resource from @AviMaayan and colleagues https://t.co/c91qIDGrdo

[Common Fund Data Ecosystem @CfdeNih]

.@NIH_CommonFund’s Request for Information invites you to share what you think is the greatest opportunity in #biomedical and behavioral research today and why they should pursue it as a program. https://t.co/qI7xmghXdp

[AviMaayan @AviMaayan]

OUT NOW! @NAR_Open SigCom #LINCS https://t.co/oAcneN3J02 @ https://t.co/oJW2YAbTn0 portal by @BD2KLINCSDCIC @MaayanLab serving 1M expression signatures from @LINCSProgram @GTExPortal & @NCBI GEO. SigCom #LINCS has #gene #geneset #metadata #sig #search & #FAIRdata @NIH_CommonFund

[Common Fund Data Ecosystem @CfdeNih]

This morning @raynamharris led a session of R for RNASeq Analysis with @GTExPortal data. Currently we're in a session on exploring data from @sparc_science! See website for info & recordings: https://t.co/yFv9rGGFc0 Register & zoom link here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

Join us today at 9 am PT! @ctitusbrown will lead a session on exploring and analyzing data from the Human Microbiome Project (@hmpdacc) with #sourmash using Amazon Web Services. Register at https://t.co/8kkLgvKPpG https://t.co/5IvxtMu1MQ

[Titus Brown @ctitusbrown]

Huuuuuuumaaaaaaaaaaaaaaaaaaaaaaaaaaan microbiome proooooooooooooooooject!

[Common Fund Data Ecosystem @CfdeNih]

This morning's CFDE Hackathon session introduced the @CfdeNih, @hmpdacc, @kidsfirstDRC, @sparc_science & @GTExPortal. In the afternoon, @jessicalumian demoed the CFDE Search Portal. Recordings are available at: https://t.co/yFv9rGGFc0 Register to attend: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

The CFDE Hackathon starts Monday, May 9! Sessions will feature the @CfdeNih Search Portal and provide opportunities to explore data from @hmpdacc, @kidsfirstDRC, @sparc_science, and @GTExPortal! More info at: https://t.co/7tFiQr6vMw… Register here: https://t.co/YbTtFa5EIu

[Common Fund Data Ecosystem @CfdeNih]

The newly updated CFDE Search Portal contains diverse data from 11 Common Fund Programs! Learn how to find and access data using the portal at the CFDE Hackathon on Monday, May 9! Visit our website for more info: https://t.co/yFv9rGGFc0 Register here: https://t.co/YbTtFa5EIu

[Common Fund Data Ecosystem @CfdeNih]

@NIH_CommonFund The CFDE Portal now features a variety of data types from 11 groups: @4dn_dcic, @exRNA, @kidsfirstDRC, @GTExPortal, @glyco_pm, @_hubmap, @hmpdacc, @druggablegenome, @LINCSProgram, @sparc_science, @MetabolomicsWB. View the portal at: https://t.co/CAvXQWpuva @NIH_CommonFund

[Common Fund Data Ecosystem @CfdeNih]

We're excited to announce a feature and data update to the CFDE Portal! Users can now create personal collections, export data, and search for diseases, genes, proteins, compounds, substances, and time series data! https://t.co/CAvXQWpuva @NIH_CommonFund

[Common Fund Data Ecosystem @CfdeNih]

The Human Microbiome Project (HMP) contains DNA sequencing data profiling many sites across the human body. The CFDE Hackathon will have a session working with HMP data on Amazon Web Services! For more details, visit: https://t.co/yFv9rGGFc0 Register here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

The CFDE Hackathon session "Intro to R for RNA-Seq Analysis" on 5/11 will teach participants how to import, wrangle, harmonize & visualize RNA-seq data in RStudio, featuring data from the @GTExPortal. More details at: https://t.co/yFv9rGGFc0 Register here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

The @sparc_science portal maps connections between nerve and organ systems for discovery and development. The CFDE Hackathon features a session on accessing these resources with the SPARC API on May 11! More info at https://t.co/yFv9rGGFc0 Register here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

The April CFDE Hackathon will feature a demo of the CFDE Portal, which contains data from over 10 different Common Fund groups! You will learn to find & access data on the portal. See our website for a full schedule: https://t.co/yFv9rGGFc0 Register here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

The Common Fund Data Ecosystem is hosting a Virtual Hackathon from May 9-13th! This event will have sessions from @kidsfirstDRC, @sparc_science and @CfdeNih. See our website for more information: https://t.co/yFv9rGGFc0 Register here: https://t.co/8kkLgvKPpG

[Common Fund Data Ecosystem @CfdeNih]

In this workshop, attendees will learn common R tools for wrangling, harmonizing & visualizing RNA-Seq data. Taught by @raynamharris with data from the Gene Expression Tissue Project (GTEx). For more info and to register, visit https://t.co/CWP1tmclej. #WednesdayWorkshops

[Gabriella Miller Kids First Data Resource Center @kidsfirstDRC]

If you're attending #AACR2022, we hope you visit @KidsFirstDRC at exhibitor booth No.3534! Attendees can get live Data Resource Portal demos, meet w/ #KidsFirst investigators/experts, and learn about how to access data for your research.
https://t.co/64wxa7ClFg
@NIH_CommonFund

[SPARC.science @sparc_science]

Visit #sparcAtExpBio Tools & Tech Showcase (booth #1141) and SPARC Portal (booth #1140) from today until Tuesday to play SPARC bingo & enter the raffle to win Philadelphia’s original Mueller's chocolates.
#NIH_SPARC
#sparc_science
@NIH_CommonFund
https://t.co/SbizuotJ3U