Guignard Lab

Computer Science, Morphogenesis & Variability:
From developing code to decoding development.
@IBDMmarseille
Open positions:

[Guignard Lab @GuignardLab]

🚨📢Our paper on imaging, segmenting, visualising and measuring patterns in gastruloids across spatial scales w/ @napari_imaging is out‼️
An project led by @_AliceGros, @JVanaret, @DunsingValentin et al.🤓
A collab. between @Equipe_lenne, @PhilippeRoudot's and our lab.
⬇️Link⬇️

[Christopher Thomas @LastChrisThomas]

Delighted to share our latest work on #Ovulation, now published in @NatureCellBio! 🎉 Grateful to my teammates @Tabea_Marx and @sarahpenir in @SchuhLab at @mpi_nat for excellent teamwork. 🙌

Dive into the details here 👇
#Ovary #Egg #Reproduction #CellBiology #Fertility

[Yinan Wan @yinan_wan]

Our paper ‘Whole-embryo Spatial Transcriptomics at Subcellular Resolution from Gastrulation to Organogenesis’ is now on biorxiv! We introduce weMERFISH, a platform for profiling gene expression in entire embryos at subcellular resolution. Here is🧵https://t.co/U6eGtbvF0g (1/12)

[Juliane Glaser @GJuliane_]

🚨Preprint alert🚨 Excited to share the #preprint version of our work @MundlosLab ! Curious about how a transposable element (TE) insertion can cause developmental phenotypes? 🧬🦠🐁
Check the 🧵 below and the full version on BiorXiv:
https://t.co/C8Yijflrnf

[Jean-Yves Tinevez @jytinevez]

1/ I'd like to share a short thread about our project to build a nationwide, distributed core-facility for bioimage analysis. We discuss this in our recent preprint:

https://t.co/DQ38mFA0Ya

[Martin Weigert (maweigert.bsky.social) @martweig]

🚀Applications are open for the 2025 edition of our EMBL Deep learning course for microscopy image analysis. This time, we will focus on more advanced methods so if so if you already know how to train models you will be in for a treat! Deadline Nov 25th

[Alfonso Martinez Arias @AMartinezArias]

#Gastruloids have many uses as #models for: early mammalian development, #SelfOrganization, mapping signalling/gene expression, morphogenesis. Here @Equipe_lenne use’m to develop gral tools to image gene/protein expression at diff scales https://t.co/9NbKx1YWpM #InNumbersWeTrust

[FocalPlane @focalplane_jcs]

📢Our preprint list is now up on FocalPlane. This list is focussed on new research in bioimage analysis. Drop us a message if there is a preprint that we've missed!
https://t.co/NzqzHmmjQX

[Physics of Life Dresden @PoLDresden]

🚨Job alert!
@PoLDresden offers excellent postdoc fellowships. It includes up to a 4-year position with salary and research funds. The next deadline for application is 01.11. Don't miss this opportunity! 🤓
Please RT #postdocjobs
https://t.co/sIY5CQDAAz

[Guignard Lab @GuignardLab]

@napari_imaging @_AliceGros @JVanaret @DunsingValentin @Equipe_lenne @PhilippeRoudot Paper: https://t.co/ODtrBvwjNf
Code: https://t.co/Sak7E4BoXX

[Guignard Lab @GuignardLab]

🚨📢Our paper on imaging, segmenting, visualising and measuring patterns in gastruloids across spatial scales w/ @napari_imaging is out‼️
An project led by @_AliceGros, @JVanaret, @DunsingValentin et al.🤓
A collab. between @Equipe_lenne, @PhilippeRoudot's and our lab.
⬇️Link⬇️

[Valentin Dunsing-Eichenauer @DunsingValentin]

New preprint: We have developed an integrated pipeline to i) image gastruloids in toto with dual-view 2-photon🔬, ii) quantitatify cell and tissue-scale patterns of gene expression and morphometric features, iii) interact with the data in @napari_imaging. https://t.co/NvexmiWnHY

[Philine @PGuckelberger]

I am so excited to share this part of my PhD where we tackle the question: What impact do 3D contacts have on how enhancers regulate their target genes? https://t.co/wtyAWg4c4j

1/

[CENTURI - Turing Centre for Living Systems @centuri_ls]

🚀 What an incredible 2024 hackathon! 🌟. Congrats to all teams for their innovative minds and hard work. See you next year!💻✨
#CENTURIHACK2024

[CENTURI - Turing Centre for Living Systems @centuri_ls]

Congrats to our winning team on the Deep Force project ✨💻 @felix_rico @ismahene_mesbah #CENTURIHACK2024

[Guignard Lab @GuignardLab]

Aaaaaand the final presentation!
#CENTURIHACK2024

[Guignard Lab @GuignardLab]

More presentations at #CENTURIHACK2024

[Guignard Lab @GuignardLab]

From our speaker: “like my mom said, when things go wrong, you can always use a Fourier transform”
#CENTURIHACK2024

[Guignard Lab @GuignardLab]

Présentations are starting at #CENTURIHACK2024 !
Impressive results!

[Philippe Roudot @PhilippeRoudot]

Scientist pointing at things #CENTURIHACK2024

[Philippe Roudot @PhilippeRoudot]

The final countdown ! #CENTURIHACK2024