Javin Oza

Javin Oza; Associate Prof@ Cal Poly, SLO - biochem, syn bio, bioengineering.
Creator of the Research Project Compass @Compass_RP
Posting my own opinions.

[Javin Oza @ozalabCP]

After years of development, I'm excited to share the Research Project Compass with you!

The Compass is a visual project planning framework that helps structure research projects from the initial question through to execution.

Useful for students & PIs!

https://t.co/av03UcDHdZ

[Javin Oza @ozalabCP]

@GabriCorso Looking forward to it!

[Javin Oza @ozalabCP]

@ItaiYanai This doesn't reflect my experience. AI lets me be more creative and get more rounds of iteration, faster, even in even in a medium I may not have skill, making me less constrained and dependant on someone else.

[Javin Oza @ozalabCP]

@claudeai I guess 'limit' doesn't mean what I thought it did.

[Javin Oza @ozalabCP]

@NikoMcCarty What about synthetic cells?

[Javin Oza @ozalabCP]

@GabriCorso @AnthropicAI @benchling @phylo_bio @amazon @tamarindbio @PaulingAi @mirrorphysics @CultivariumFRX And what about for screening small molecule binders?
Lets say something like this:
https://t.co/gkv79CtIO5

[Javin Oza @ozalabCP]

@GabriCorso @AnthropicAI @benchling @phylo_bio @amazon @tamarindbio @PaulingAi @mirrorphysics @CultivariumFRX What's the recommended pipeline?
If I'm already using boltz-2, do I switch to boltsmol-1? Use them sequentially?

[Javin Oza @ozalabCP]

@GabriCorso @AnthropicAI @benchling @phylo_bio @amazon @tamarindbio @PaulingAi @mirrorphysics @CultivariumFRX Love that the quick start has recommended prompts for agents!

[Javin Oza @ozalabCP]

@nimivashi15 @elonmusk @SpaceX I can see the entire biomanufacturing industry reaching 1T, but a trilicorn suggests that they've unlocked a product line of that value thats not currently available (any manufacturing companies reach trillion dollars today?).

[Javin Oza @ozalabCP]

@JakeFleshner Safer chemotherapies

[Javin Oza @ozalabCP]

@CultivariumFRX Would love to try this with our iGEM team!

[Javin Oza @ozalabCP]

@nanogenomic @bjing2016 So is the recommendation to use both and take the candidates that pass both Boltz & Promera filters to experimental testing?

[Javin Oza @ozalabCP]

@CalPolyCSM @schmidtsciences https://t.co/Ww1UxhoBSg

[Javin Oza @ozalabCP]

This term I taught a first-of-its-kind course on #syncells @CalPolyCSM: undergrads built synthetic cells from scratch & contributed original experiments from day one. We'll share all materials and results openly, stay tuned. Thankful to @schmidtsciences and the students who made it possible! https://t.co/RTAK5aZtt4

[Javin Oza @ozalabCP]

@ThatMrE Appropriately named model bc this highly capable LLM is nothing more than a fictitious story for bio work.

[Javin Oza @ozalabCP]

@miangoar @jan_choutka The cost of synthesizing/maintaining a given AA is a likely selective pressure.

[Javin Oza @ozalabCP]

@KevinKaichuang @SuJinyan6 P. S. Here's the link for the preprint & template https://t.co/av03UcDHdZ

[Javin Oza @ozalabCP]

@KevinKaichuang @SuJinyan6 Give the Research Project Compass a try, it can help align everyone on the project. You can even prompt your agent to help fill it out :)

(I have an AI assisted walk-through if you want to try it also)

[Javin Oza @ozalabCP]

Congratulations to Chris and Bella for graduating from @CalPolyCSM!
They made such important contributions to our group's work and being positive role models for the younger students!
Thanks to @NikoMcCarty for the books!

[Javin Oza @ozalabCP]

@TensorTwerker Its about $0.016 per structure/binding for me tobrun it on a VM.
But I haven't tried the API, so maybe its worth the premium.