PCF-OUS Oslo

Proteomics core facility Oslo, Immunology, Phosphoproteomics, Targeted proteomics

[PCF-OUS Oslo @PCFOUSOslo]

We were keep getting more and more requests for proteomics analysis for big batch of samples so we managed to install timsTOF pro 2 at our core facility and now we are ready for more MS analysis.

[PCF-OUS Oslo @PCFOUSOslo]

@ypriverol @pride_ebi pride has problem now. no one from our lab is able to login

[PCF-OUS Oslo @PCFOUSOslo]

Please read this nice article from @Carroll_C_J and collaboration with @PCFOUSOslo @napi_norway

[Christopher Carroll @Carroll_C_J]

Check out our study with @CBJacksonLab &Battersby lab demonstrating the requirement of supernumerary proteins of the human #mitochondrial #ribosome in mitochondrial protein synthesis and the unique role for mS37. @StGeorgesUni @SGUL_Genetics @helsinkiuni https://t.co/FfNCely1hV

[Selbach Lab @SelbachLab]

How can you predict kinase activity in phosphoproteomic data? This database allows you to do this, even for poorly annotated kinases. Read more in this new paper: https://t.co/93O0Wnlcyu”

[PCF-OUS Oslo @PCFOUSOslo]

@rhuttenhain @FemalesInMS Here is one information: https://t.co/E97Y9AvcHc

[Molecular & Cellular Proteomics @molcellprot]

Leutert et al. provide an overview of the basic modes of #PTM crosstalk, the proteomic methods to elucidate PTM crosstalk, and approaches that can inform about the functional consequences of #PTMcrosstalk ― @UW @MarioLeutert @juditvr @sam_entwisle

https://t.co/QViAxfOsal

[PCF-OUS Oslo @PCFOUSOslo]

Interested in MS based antibody analysis. Please read this Review published in collaboration with our core facility!!

[GreiffLab 💻🔬💊 @victorgreiff]

Very happy to see that our review on "Progress and challenges in mass spectrometry-based analysis of antibody repertoires" is out in @TrendsinBiotech.
https://t.co/4l8pYAXFXr. Led by @ISnapkov @mchernigovskaia @ATGTAC @KhangLeQuy and in collab with @PCFOUSOslo (Tuula Nyman).

[Journal of Proteome Research @JProteomeRes]

What’s the best data-independent acquisition (DIA) workflow for your proteomics experiments? Researchers tested a standard human proteins mixture with 36 workflows including 4 different DIA windows and 6 different software tools to find out.

https://t.co/XzFBz4LOFk

[CoxLab @TheCoxLab]

MaxDIA is in the spotlight of @naturemethods

Many thanks to @DrArunimaSingh for this kind overview

https://t.co/j0a5fjXMcp

#proteomics @MPI_Biochem @maxquant @NatureBiotech

[Alexey Nesvizhskii @nesvilab]

Announcing the release of #FragPipe 15. Improvements in all modules, including MSFragger and IonQuant. Support for TMT, SILAC, LFQ-MBR quant, FAIMS, open PTM searches, glycoproteomics, HLA/peptidomics, spectral library building for DIA analysis, and more. https://t.co/H4Tx88SheU

[PCF-OUS Oslo @PCFOUSOslo]

It has been amazing week! PCF prepared more than 400 proteomics samples in week. We have developed high throughput sample preparations pipeline. If you want to investigate outcome of your drug or gene editing screen at protein level.  We can help you with that. @sachinPCFOUS

[NAPI Norway @napi_norway]

Read about three new @BrukerMassSpec instruments just installed at the NAPI core facilities @unioslo_mn @UniOslo_MED/@Oslounivsykehus, and @UniNMBU. Exciting new investments that will benefit many projects. Thanks to @forskningsradet for funding. https://t.co/7eLNp93qYx

[PCF-OUS Oslo @PCFOUSOslo]

@PCFOUSOslo

[Fridtjof Lund-Johansen @F_Lund_Johansen]

Ah, my favorite: The machine that goes "bing". @forskningsradet @napi_norway @BrukerMassSpec @EvosepBio @UiO_LifeSci @

[PCF-OUS Oslo @PCFOUSOslo]

Very productive day, installation process is much more faster than expected. Most difficult part was decide this amazing things a name. Finally, we named it Hilton II ( in-house name)@napi_norway @sachinPCFOUS @jrbrtsn

[PCF-OUS Oslo @PCFOUSOslo]

We @PCFOUSOslo are adding new @BrukerMassSpec MS instrument to our PCF facility. Installation start today and we are looking forward to use it in coming weeks👏👏@sachinPCFOUS @napi_norway

[Pastel BioScience @PastelBio]

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant | https://t.co/cCRpFu0syy #proteomics

[PCF-OUS Oslo @PCFOUSOslo]

Very good start of new year! Good collaboration between @stamnaes and our proteomics core facilities @PCFOUSOslo @sachinPCFOUS @napi_norway

[Jorunn Stamnæs @stamnaes]

Laser capture microdissection combined with quantitative MS-based #proteomics of #celiac intestinal epithelium reveals low-level inflammation in patients that respond strongly to gluten🌾🍞  https://t.co/lqHSDf0dgp @JCoDiRC @PCFOUSOslo

[Matthias Mann Lab @labs_mann]

We developed a scalable, quantitative and ultra-high sensitivity workflow for true single cell proteome analysis - one by one. Single cells have a stable proteome but not transcriptome. Great collaboration with @Bruker @EvosepBio @fabian_theis. Preprint: https://t.co/2edZ99u7Xw

[PCF-OUS Oslo @PCFOUSOslo]

@violalobert congratulations 🎉🎊!!

[PCF-OUS Oslo @PCFOUSOslo]

BOOST pTyr quantification

[Molecular & Cellular Proteomics @molcellprot]

"The BOOST strategy can potentially be applied in analyses of other PTMs here treatments that broadly elevate the levels of those modifications across the #proteome are available."

Paper in Press: " TMT PV BOOST channel expands pTyr quantitation depth"

https://t.co/EAg3n07KFS