Shouvik Mani

ML x Cancer Genomics at @anshulkundaje @MayaKasowski labs. PhD student at @Stanford. Skills include long-distance running and easily fitting in economy class

[Elham Azizi @elhamazizi]

Our extended #DIISCO paper led by @cam_park and @ShouvikMani includes new benchmarking, robustness analyses, and application to #CART data! Delighted to have #DIISCO highlighted on the cover of @genomeresearch too
https://t.co/bmceKMUiWa
https://t.co/aHSbI8sls5

[Shouvik Mani @ShouvikMani]

@justjhong @AchilleNazaret Woah congrats!!

[Shouvik Mani @ShouvikMani]

Had a great day 1 at @RECOMBconf! Wonderful talk by @VanAllenLab about biologically-informed ML approaches for molecular discovery. Many open problems including the role of non-coding mutations in cancer and combining signal from germline+somatic variants

[Shouvik Mani @ShouvikMani]

@mnavjeevan Congrats Prof. Manu! 😎

[Shouvik Mani @ShouvikMani]

@DoronTheViking @NatureBiotech @dana_peer Wow congrats Doron!!

[Shouvik Mani @ShouvikMani]

@SiyuHe7 @elhamazizi Congrats @SiyuHe7 and team! Love the cake and starfysh hats 😎

[Shouvik Mani @ShouvikMani]

@dana_peer Go Dana! Hope you crush it

[Shouvik Mani @ShouvikMani]

Feel so lucky to be a part of this team! My intro to comp bio and learned how great science gets done

[Katie Maurer @Dr_KatieM]

1/6 Excited to share our new preprint, out today on #biorxiv, a large #singlecell effort studying response to adoptive cellular therapy for relapsed myeloid malignancy after #HSCT !!

[Shouvik Mani @ShouvikMani]

Learning gene regulation...Gill Bejerano style!

[Shouvik Mani @ShouvikMani]

Congrats Elham! And those videos look amazing 🤩 What a privilege to have started my scientific career working with and learning from you

[Elham Azizi @elhamazizi]

I am still in shock! Deeply humbled & grateful to @TakedaPharma @NYASciences for this honor and for highlighting our work: https://t.co/U3Unkv4LPM Huge thanks to the phenomenal trainees I am so privileged to work with, the supportive @ColumbiaBME @Cancer_dynamics @columbiacancer

[Shouvik Mani @ShouvikMani]

In the process I also found some great resources to learn about genomics, filled with beautiful figures and explanations. An absolute goldmine:
@StJude's https://t.co/mevqj1r9wx
@genome_gov's https://t.co/0RCqIvLpDo
@Nature's https://t.co/PYw7rHhxoe

[Shouvik Mani @ShouvikMani]

Had a “BLAST” teaching comp bio to high schoolers at @StanfordSPLASH this weekend! My fav part was students BLASTing proteins on their phones for our Find this Protein activity 😄 Big shoutout to @V_Augustina14 for helping out! Slides and activity here: https://t.co/JOJVVipLTn

[Shouvik Mani @ShouvikMani]

@V_Augustina14 @V_Augustina14 you gotta disguise yourself as an 8-12 grader…no fancy lab coat!

[Shouvik Mani @ShouvikMani]

Teaching a comp bio class for @StanfordSPLASH in two weeks! Any recs on content/activities to make this topic fun and accessible for high schoolers?

[Shouvik Mani @ShouvikMani]

Check out our DIISCO 🪩 preprint, featuring the dream team! 😎

[Cameron Park @cam_park]

1/4 Excited to share #DIISCO 🪩, a Bayesian method for inferring cell-cell interactions over time in longitudinal #singlecell data 😱 DIISCO takes in cell type proportions and receptor-ligand expression and outputs cell state dynamics and cell-cell interaction networks! 🕺💃

[Shouvik Mani @ShouvikMani]

ICYMI https://t.co/K7UvS0XZL1

[Shouvik Mani @ShouvikMani]

How do you teach CS sorting algorithms to middle schoolers? By sorting bears of course! 🐻 Our activity for @GirlsScienceDa1. Here's bubble sort

[Shouvik Mani @ShouvikMani]

Of course since it's Columbia, we were obligated to introduce them to @BarackObama sort

[Shouvik Mani @ShouvikMani]

Outrageous. Can't believe this is real. I wish US media would report more of these stories...

[Elham Azizi @elhamazizi]

Almost 1200 innocent school girls across 15 cities in Iran have been the target of systematic gas attacks and poisoning *inside* schools. This biological terrorizing is suspected to be carried out by hardliners to stop girls from going to school @Malala's story is not far away 😔

[Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics]

Congratulations to Elham Azizi (@elhamazizi) who received an R01 grant from the @NIH to unlock novel insights about the spatial organization of cell types, their interactions, and mechanisms in multiple biological systems. Read more: https://t.co/VMeF8MU4AK