Anusha Bishop

PhD candidate @ESPM_Berkeley @MVZUCB @DLabAtBerkeley | Evolution/Ecology/Genomics/Data Science 🧬🦎🪰🐢 | she/her

[Anusha Bishop @anusha_bishop]

I’m excited to share the first paper of my PhD, now out in @MethodsEcolEvol! In it, @chamberea, @ianjwang, and I introduce wingen, a new method for generating maps of genetic diversity using moving windows. More below!⬇️#OA
https://t.co/vcSeO3ehvt

[Anusha Bishop @anusha_bishop]

Wingen can now be installed from CRAN using install.packages(“wingen”)!

[Anusha Bishop @anusha_bishop]

I’m excited to share the first paper of my PhD, now out in @MethodsEcolEvol! In it, @chamberea, @ianjwang, and I introduce wingen, a new method for generating maps of genetic diversity using moving windows. More below!⬇️#OA
https://t.co/vcSeO3ehvt

[Anusha Bishop @anusha_bishop]

@ESPM_Berkeley @WyoFile Super cool @sammmmaher!

[E. Anne Chambers @chamberea]

Want to use landscape genomics for conservation? Curious about how to apply these methods to individual-based sampling? Not to worry– use algatr! Our new paper w/ co-first author @anusha_bishop and coauthor @ianjwang is out in MER! More below ⬇️ #OA
https://t.co/2mltpHyZz8

[Anusha Bishop @anusha_bishop]

@jfmclaughlin92 😍 🐀

[Sam Maher @sammmmaher]

Twitter, I need your help! The 3rd chapter of my dissertation includes a survey on shed antler collection in the Greater Yellowstone Ecosystem. Can I have some help getting the word out? Bonus points if you send this to a shed hunter who isn't on twitter :)

[Methods in Ecology and Evolution @MethodsEcolEvol]

📖Blog📖

In this blogpost @anusha_bishop explain their new method for creating maps of genetic diversity using the R package Wingen🧬

Read below
🔽
https://t.co/aG4YOgd63X

[Monica Donegan @MonicaDonegan3]

Big Day: First tweet and first paper (!!) about parallel host shifts in a plant pathogen out now at @MPPjournal
https://t.co/EkwYfBkOIX

[Methods in Ecology and Evolution @MethodsEcolEvol]

📰Published📰

Bishop et al.introduce wingen, an r package for calculating continuous maps of genetic diversity, including nucleotide diversity, allelic richness, and heterozygosity.
🔽
https://t.co/PRaasnGvNX

[Anusha Bishop @anusha_bishop]

@arildodias_eco @MethodsEcolEvol @chamberea @ianjwang Thanks, great question! Yes! I included a function called window_general() that should work for a broader range of data types and statistics. More details about this function can be found in the wingen package vignette.

[Anusha Bishop @anusha_bishop]

I’m excited to share the first paper of my PhD, now out in @MethodsEcolEvol! In it, @chamberea, @ianjwang, and I introduce wingen, a new method for generating maps of genetic diversity using moving windows. More below!⬇️#OA
https://t.co/vcSeO3ehvt

[Anusha Bishop @anusha_bishop]

@tannermyers_19 @MethodsEcolEvol @chamberea @ianjwang Great to hear! Thanks!

[Anusha Bishop @anusha_bishop]

@chamberea @_brittawhite @MethodsEcolEvol @ianjwang ^seconding that! Thanks!

[Anusha Bishop @anusha_bishop]

7/ wingen is implemented as an R package that can be installed from GitHub. This is my first package and any feedback is greatly appreciated (especially if you find bugs🐞)! Also stay tuned for more features in the future…
https://t.co/2tyxo3BLLE

[Anusha Bishop @anusha_bishop]

6/ Some other nice features of wingen:
✅Takes basic inputs (VCFs and coordinates) and produces basic outputs (rasters)
✅Uses simple functions in R
✅Runs super fast! (w/ options for parallelization)
https://t.co/vcSeO3ehvt

[E. Anne Chambers @chamberea]

My #OA paper, w/ co-first author @frogsicles comparing 2bRAD & ddRAD is out!

When prioritizing practical things like ease, effort, & repeatability, 2bRAD is for you! But if you’re more focused on maximizing phylo info, then stick w/ ddRAD. More below ⬇️

https://t.co/XSMhsQuSHu

[Anusha Bishop @anusha_bishop]

@ras_nielsen Thanks to my incredibly supportive committee who stuck it out with me!