David Dylus

[Ferdinand Marlétaz @Ferdix]

So happy to see our brittle star genome led by 𝗘𝗹𝗶𝘀𝗲 𝗣𝗮𝗿𝗲𝘆 finally published in @NatureEcoEvo highlighting the evolution of echinoderm chromosomes as well as the origin of the regeneration programm https://t.co/qrr0IWXb0X

[Dessimoz Lab @DessimozLab]

Excited to release FastOMA, a rewrite of OMA orthology algorithm that scales linearly, while maintaining OMA’s high accuracy. FastOMA can process all >2000 eukaryotic UniProt ref proteomes within 24 hours. Try it out https://t.co/helQL3wo4c
Preprint: https://t.co/vs21iN8P7o (1/4)

[Fritz Sedlazeck @sedlazeck]

Happy to see a summary about Read2Tree from our @NatureBiotech paper from my home country @austria (German only sorry): https://t.co/OCQpMeVwL0

Link to paper https://t.co/lU3odW4DtH
@cdessimoz @SinaMajidian @ddylus @BCM_HGSC @RiceCompSci

[GBE (Genome Biology and Evolution) @GenomeBiolEvol]

Did you catch @Gloveface's talk about bringing science to the public at #SMBE2023? Be sure to also check out her GBE article: Homoeolog Inference Methods Requiring Bidirectional Best Hits or Synteny Miss Many Pairs https://t.co/rU3rRW6J03

[Dr. Corrie Moreau @CorrieMoreau]

📢📢📢 The new 2023-2024 list is out! Please share widely! If you are looking for a faculty position or postdoc in ecology & evolutionary biology check out this great community run resource: https://t.co/kTkoSvB72a

[Sina Majidian @SinaMajidian]

Could you envision a future where inferring #orthology for thousands of species becomes possible?!
The future is already here and I'll be presenting FastOMA in #ISMBECCB2023 in Lyon!
See you in EvolCompGen @EvolComp on Thursday 27th at 15:30!
Try it out https://t.co/h2DykLPpbd

[Fritz Sedlazeck @sedlazeck]

Pls RT: 4 weeks until the registration deadline of our #Bioinformatics #Science #Hackathon @BCM_HGSC. Come join us & work on exciting prototypes across @dnanexus @PacBio @nanopore @GREGoR_research @SMaHTnetwork.

Prizes for the best teams!
Aug30-Sept1: https://t.co/HWs6jj4ZNY

[Christophe Dessimoz @cdessimoz]

The length distribution of proteins is remarkably uniform across the tree of life ➡️ universal selection force at play. Paper by postdoc extraordinaire @Why_NeverS, with @OdileLecompte & @Gloveface.

📝Blog post + backstory https://t.co/nz6dGvbqTZ
📰Paper https://t.co/Z7HSqBrpCp

[Christophe Dessimoz @cdessimoz]

Reminder that we have 2 postdoc openings:
1) position on synteny and gene loss in 🍅w/ @SebastianSoyk https://t.co/T8fvYFVoSb
2) evolutionary structural biology to reconstruct the proteome & interactome of the first animal (urmetazoa) w/ @pedrobeltrao https://t.co/H94gM38nT8

[Christophe Dessimoz @cdessimoz]

This is part of an exciting @snsf_ch -funded interdisciplinary grant with @dirk_fasshauer, @multicellgenome and @steg0s4urus. This position is to develop cutting edge methods for evolutionary structural biology. Please apply or help us spread the word!

[Christophe Dessimoz @cdessimoz]

Bioinformatics can address these challenges! At SIB, we have researchers on it (e.g. Daniele Silvestro @unifr & @rmwaterhouse @unil), an environmental working group, and we are now looking for a *Director for Environmental Bioinformatics*. Apply or share! https://t.co/Rz6930MlFH

[Nature Biotechnology @NatureBiotech]

@unil @ISBSIB @ETH_en @BCM_HGSC @RiceCompSci @uclcs @CloeFor @sedlazeck @ddylus Co-lead authors @cdessimoz and @sedlazeck go #behindthepaper on a method to build phylogenetic trees directly from raw reads, bypassing time-consuming steps such as genome assembly. Plus: what Read2Tree has in common with the song "Smoke on the Water" https://t.co/Nj8m6PdwYm

[Christophe Dessimoz @cdessimoz]

Super happy that the Read2Tree paper is now out at @NatureBiotech—the centrepiece of @ddylus’s postdoc and a wonderful collaboration with @sedlazeck. Key contributions by @SinaMajidian and @AdrianAltenhoff too. https://t.co/OFfG9nxciG

[David Dylus @ddylus]

Check out our new paper on "Antibacterial inhibitors targeting the lipoprotein transport pathway". #antibiotics #microbiology #infectiousdiseases https://t.co/AczDKi6dne

[Rosa Fernández @Rosamygale]

Looking for a #postdoc? We're looking for candidates to apply to the Beatriu de Pinos Postdoc program to join our lab @metazomics @IBE_Barcelona. 3-year contract and competitive salary. Possibility of funding until publication of selected candidates 1/2

[Christophe Dessimoz @cdessimoz]

Genome annotation quality affects so many things we do. Our brilliant Yannis Nevers @Why_NeverS devised a tool to assess proteomes—quick and easy. It reports not only *missing* but also *dubious* content!

Blog post: https://t.co/vegDQSml6I
Preprint: https://t.co/1T4JaGeojn

[EvolCompGen @EvolComp]

@sedlazeck presents Read2Tree: a new assembly-free approach to directly infer phylogenetic trees efficiently from raw reads with 0.2x coverage+. Come hear how it applied to Coronaviridae samples
Room: G
With @ddylus, Adrian Altenhoff, @SinaMajidian, and @cdessimoz
#ISMB2022

[Fritz Sedlazeck @sedlazeck]

Read2Tree: an assembly-free comp. genomics method for small & large-scale projects. Works on @Pacbio @nanopore @illumina& RNA/DNA & low coverage 0.2x+. Get your phylo tree from raw reads in minutes! e.g #COVID19 https://t.co/M16N8aO8oY @ddylus @cdessimoz @BCM_HGSC #Bioinformatics

[Maxwell Shafer @maxwellshafer]

Happy to announce that our (@schierlab, @hilsawh) paper is now available in its final, beautiful, form @NatureEcoEvo! https://t.co/2Ye40asDXa

[Ellen Foxman @EllenFoxman]

Important thread with great examples of unconscious bias in scientific careers. Very much worth reading. #inclusion #diversitymatters #HeForShe