Frederic Lemoine

Bioinformatics @institutpasteur ; data science, ngs, transcriptomics, biotech, evolution, phylogeny,... golang

[SciencesNetwork @SciencesNetwork]

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus
https://t.co/9LTSlmE6Tr

[bioRxiv Bioinfo @biorxiv_bioinfo]

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus https://t.co/lPaItkcp9J #biorxiv_bioinfo

[Frederic Lemoine @fredebibs]

PhyML now implements the Bayesian phylogenetic bootstrap! To test it: option "--bayesian_bootstrap" with the latest commits of PhyML: https://t.co/eIWzbhHuoT
Example: `phyml -d nt -i align.phy -m GTR -b 100 --bayesian_bootstrap`

[Frederic Lemoine @fredebibs]

This is now published in @MolBioEvol ,
Thanks to the reviewers who helped improve the manuscript!

https://t.co/kCza4LaxUx

[CNRS à Paris-Saclay @CNRSIdFSud]

#TalentsCNRS 🥈
Sarah Cohen-Boulakia, professeure des universités Université Paris-Saclay au @LisnLab (CNRS/@UnivParisSaclay /@centralesupelec /@Inria), s’est vue remettre la médaille d’argent du @CNRS pour ses recherches en sciences des données et en bioinformatique.

[Institut Pasteur, since 1887 @institutpasteur]

🌟 Join the Institut Pasteur as Scientific Director! 🌍

We're seeking a visionary scientist to shape global health through innovation and excellence. Help us drive cutting-edge research. Feel free to share with qualified candidates in your network!

👉 https://t.co/qxtt3TppZR

[Frederic Lemoine @fredebibs]

This is now published in @MolBioEvol ,
Thanks to the reviewers who helped improve the manuscript!

https://t.co/kCza4LaxUx

[Frederic Lemoine @fredebibs]

Our new preprint: « The Bayesian Phylogenetic Bootstrap, Application to Short Trees and Branches »
https://t.co/i9CJi6JB2k
In this approach, bootstrap MSA sites are given continuous weights rather than being sampled with replacement.

[Institut Pasteur, since 1887 @institutpasteur]

Mission accomplie 👏 Nos coureurs ont brillamment terminé les #20kmdeParis 🏃‍♀️ Merci à eux et à tous les donateurs qui soutiennent le #Pasteurdon. Votre générosité fait la différence pour la recherche 🌟

[Institut Pasteur, since 1887 @institutpasteur]

Go #TeamPasteur 🏃‍♀️🏃‍♂️ 60 coureurs passionnés sont sur la ligne de départ des #20kmdeParis pour soutenir la recherche et le #Pasteurdon. 🎗️
Merci à nos athlètes et à tous ceux qui encouragent la générosité au profit de la science !

[Mackenzie Weygandt Mathis, PhD @TrackingActions]

EPFL has several faculty positions open this year, including in life sciences (aka including neuroscience!) 🧠🧬🦠

Great starting conditions, base yearly funding, top students, and … I mean, it’s gorgeous- quality of life is A+…

https://t.co/Leie72apcn

[Frederic Lemoine @fredebibs]

Accounting for partner notification in epidemiological birth-death models https://t.co/xbe3pWexvz

[Camille Berthelot @camilleberthelot.bsky.social @CamLBerthelot]

Looking for a PhD position in 2025? 🧑‍🎓
Interested in endometriosis research? 🩸

We are looking for a computational candidate for the Pasteur-Paris University PhD program to join a fantastic international collab between my lab, @afilimon and L. Doridot!

Please RT!

[VanRijLab @VanRijLab]

We are recruiting! For an @ERC_Research-funded project, we are PhD student(s) and postdoc to work on small RNAs in vector mosquitoes. Please RT or forward to interested candidates.
@radboudumc_weet
https://t.co/NtWhPTk3Js

https://t.co/UihyoVjaOB

[Rayan Chikhi @RayanChikhi]

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan.

#bioinformatics #petabase #genetics #genomics #openscience

https://t.co/CQSBmvn7se

[Nico Rascovan @NRascovan]

Our lab at @institutpasteur initiated the #Olympiome2024, a @metasub initiative to study changes in the urban microbiome during the #joParis2024! If you want to know more, here a thread about it. (1/X)

[Cedric Notredame @cnotred]

🚀 NAR Genomics & Bioinformatics now ranks #8 among bioinformatics journals with a 2023 impact factor of 4.0! We're opening 3 Deputy Editor positions. Join our team: https://t.co/jSZx4SUPps #Bioinformatics #AcademicJobs #nargab

[Frederic Lemoine @fredebibs]

"Much Ado About Nothing: Accelerating Maximum Likelihood Phylogenetic Inference via Early Stopping to evade (Over-)optimization". Faster tree inference in RAxML-NG https://t.co/iN5YSsuVAE

[Frederic Lemoine @fredebibs]

It uses 1) goalign https://t.co/y3vifd8PE3 to generate weights (goalign build weightboot) , 2) PhyML https://t.co/eIWzbhHuoT to infer trees (it supports continous site weights with option "--weights"), and 3) gotree https://t.co/ZoYrVXiG8u to compute supports

[Frederic Lemoine @fredebibs]

If you want to give it a try, a Nextflow workflow is available here https://t.co/n2uz4qBFzr
Input: MSA
Output: Phylogenetic tree with bayesian supports + a figure with distribution of branch lengths.