Gabriel Margarido

[LGN-ESALQ-USP @lgn_esalq_usp]

Profª Drª Maria Lúcia Carneiro Vieira, deste Depto. de Genética, eleita Membro Titular na área de Ciências Agrárias da Academia de Ciências do Estado de São Paulo (ACIESP - @aciespsp).

#ESALQGenetics

https://t.co/4PhTAHetPA

[Gabriel Margarido @gramarga]

Parabéns pela grande conquista, @Fernando_Correr! Nada me alegra mais do que ver os orientados chegarem mais longe que eu!

[LGN-ESALQ-USP @lgn_esalq_usp]

O Dr. Fernando Henrique Correr ( @Fernando_Correr ), orientado do Prof. Dr. Gabriel Rodrigues Alves Margarido ( @gramarga ), do Departamento de Genética, ESALQ/USP, premiado no PRÊMIO CAPES DE TESE - EDIÇÃO 2022.

https://t.co/Tv1J4G6Ovn

[Diego M. Riaño-Pachón @diegoriano]

Our new book chapter, for any one interested in applying transcriptomics in plants: https://t.co/GXbyXLdE5y with @gramarga, Hector Fabio Espitia-Navarro and John Jaime Riascos

[Amila Welihinda @amilajack]

Life is to short to use dated cli tools that suck

Try these instead 🧵

[Gabriel Margarido @gramarga]

@RicardoAAzeved2 @aafgarci Obrigado, Ricardo! Seu apoio constante significa muito para mim. Abraço!

[Lorena Batista @LorenaB99151818]

Now published on @TheorApplGenet!My research together with @gramarga @anetepsouza
Very happy about this :D
https://t.co/yZDtNdGxsW

[Cees Dekker @cees_dekker]

Today we publish a paper in @ScienceMagazine that expands nanopore readings to the proteome:
a nanopore-based scanner to read off PROTEINS at the single-molecule level! 🤩

Awesome experiments by postdoc Henry Brinkerhoff of our #CDlab, with MD simulations of @aksimentievLab

1/x

[Anthony Gitter @anthonygitter]

This is a great overview of machine learning written for a biological audience. It covers not only different algorithms but also data leakage, evaluating articles that use machine learning, etc.

https://t.co/n3kjeFRnVT

[Gabriel Margarido @gramarga]

@nilshomer I work with plant genomics and have often used Picard. Imposter syndrome can definitely hit us all, but you're one (of many) that I look up to. Thanks for your contributions!

[Alexandre Aono @AonoAlexandre]

I'm very glad to see our manuscript published. Congrats @rjgpimenta @BassoLetycia @Fernando_Correr @HosakaGuilherme @marishani17 @Beniciocsilva @DSforca @santos_lucasb @shin_nagai @gramarga @anetepsouza and all collaborators!!

[Lorena Batista @LorenaB99151818]

Is finally out in the world! New preprint: Genomic prediction with allele dosage information in highly polyploid species. My PhD paper together with @gramarga and @anetepsouza
https://t.co/Sb03s2qHwA

[Elin Videvall @ElinVidevall]

Bioinformatic pipelines

[Gabriel Margarido @gramarga]

@anthonygitter Big congrats, Tony!

[Fernando Correr @Fernando_Correr]

Happy to share our new publication in BMC Genomics (@BMC_series) on differential expression in leaves of Saccharum genotypes contrasting in biomass production. Thanks to @gramarga, @GuilhermeHosaka and all the other authors for their great contributions!

https://t.co/SDCgxWczLq

[James McInerney @jomcinerney]

Wow. Did not know this.

[Graham Coop @Graham_Coop]

A new (3rd) release of the "Population and Quantitative Genetics" book. As usual, the book is completely open access as are all of the underlying source code, figures, illustrations.
https://t.co/cVwohT4rMj

[PM @[email protected] @pashadag.bsky.social @pashadag]

What do Eulerian and Hamiltonian cycles have to do with genome assembly? A blog post with Mihai Pop: https://t.co/Zauwzo8Bxz

[Jacob Schreiber @jmschreiber91]

The more papers I read for a review article I'm writing about ML pitfalls in genomics, the more my faith is shaken in the results from papers that apply machine learning to methylation arrays. A salty thread. 1/

[Steven Salzberg 💙💛 @StevenSalzberg1]

I was wrong. Thanks to all those who offered constructive criticism https://t.co/oHbz02AJ6I

[Heng Li @lh3lh3]

SRA plans to drop base quality. This would make resequencing data largely useless for var calling. There are better ways to save space: quality binning and CRAM. If you use reseq data from SRA, please voice yourself in this RFI (deadline in 2 weeks): https://t.co/Ii4d4wyH0s