Guix HPC Project

Reproducible software deployment for high-performance computing.

Free yourself: Join the #Guix community on the Fediverse. ☛

[Guix HPC Project @GuixHpc]

We are no longer using this account.

The past weeks have demonstrated that centralization poses concrete threats we can no longer condone.

The home of #Guix, #FreeSoftware, #HPC, and #OpenScience is on Mastodon: join us!

👉 https://t.co/BZBpsbAguV

[Guix HPC Project @GuixHpc]

🐍 Packaging #Python software for #Guix? The new 'pyproject' build system provides support for PEP 517.

👉 https://t.co/wg1LbSaObj

[Guix HPC Project @GuixHpc]

Six years ago, before another #OpenSSL security fix, #Guix gained "grafts": a mechanism that lets packagers deliver security updates without entailing rebuilds/redownloads of dependent packages.

👉 https://t.co/AzyIsoVV9J

A key enhancement of functional pkg mgmt!

#infosec

[Guix HPC Project @GuixHpc]

Now's a good time to join the growing #GNU #Guix, #HPC, and #OpenScience communities on Mastodon, the federated social media!

👉 https://t.co/BZBpsbAguV

[Guix HPC Project @GuixHpc]

☕️ Pour découvrir comment démarrer avec #Guix, pour du #HPC ou de la #RechercheReproductible, rendez-vous au Café Guix en ligne !

📅 mardi 25 octobre, 13h-14h
▶️ https://t.co/nOD7fquD93

Cc: @GroupeCalcul

[Guix HPC Project @GuixHpc]

Using #Jupyter? Wondering how to keep your #Python environments under control?

Check out Alice Brenon's talk on the journey from irreproducible notebooks to #Guix-controlled environments. 👇

▶️ https://t.co/6hvRsEGpiN

#Guix10Years #DigitalHumanities #OpenScience

[Guix HPC Project @GuixHpc]

@9bladed Thank you for your work on '--emulate-fhs'! 👍

[Guix HPC Project @GuixHpc]

You enjoy #Guix but miss /bin, /lib, & co.?

You'll love the new 'guix shell --container --emulate-fhs'!

👉 https://t.co/aC031hA479

[Guix HPC Project @GuixHpc]

#Containers? #Guix?

Learn about all things containers in #Guix in this new cookbook section by Ricardo Wurmus:

👉 https://t.co/FkQJmPIhUH

[Guix HPC Project @GuixHpc]

@daviwil Yes, it supports this use case (that was one motivation), with the usual caveat when running pre-built binaries: those binaries must target compatible application binary interfaces (ABIs).

[Altuna Akalin @AltunaAkalin]

We provide a #Reproducible and end-to-end analysis #pipeline for wastewater sequencing that is able to uncover #SARSCoV2 lineages. we use @GuixHpc for reproducibility. Our data analysis framework works with data from a variety of locations and sequencing methods.4/n

[Guix HPC Project @GuixHpc]

"Using #Guix environments in #Emacs using buffer-env"

👉 https://t.co/xOQaFzveD2

[Guix HPC Project @GuixHpc]

@MortenLinderud @epicevilmusic @janneke_gnu @alex_gaynor @geofft @ReproBuilds Exactly.

Rust is "bootstrapped" in #Guix, a fancy way of saying Rust and its dependencies are all built from source (unlike on other distros).

It's a significant effort though:
https://t.co/WTFuvgAjIm

... and now it's in the Linux dependency graph.

[Guix HPC Project @GuixHpc]

@nivallet @ScientificData @SpringerNature @rstatstweet Congrats @nivallet, @MichonneauDavid, and Simon Tournier!

That's a great illustration of the role of software deployment in #ReproducibleResearch and #OpenScience workflows. 👍

[Nicolas Vallet @nivallet]

@GuixHpc uses a saved state of #dependencies at a fixed point and deploys the exact same environment at anytime with only 2 text files.

[Nicolas Vallet @nivallet]

🧐Ever wanted to make your research more #openscience #reproduciblescience?
Find out how @GuixHpc improved our research in our #OpenAccess paper in @ScientificData @SpringerNature
📍https://t.co/YpNrMC8MSg
📍https://t.co/z3QnahP9Li
@rstatstweet cytometry analysis is shown

[Guix HPC Project @GuixHpc]

A non-coding way to contribute to #GNU #Guix is to translate it.

👉 Get started with Lepiller's excellent tutorial!
📺 https://t.co/O3qvSrXJ9G

#FreeSoftware #i18n #Guix10Years

[Guix HPC Project @GuixHpc]

Want to contribute code to #GNU #Guix beyond packages?

👉 Do not miss Poiret's guided tour of the source tree!

📺 https://t.co/t6pF0OpUIS

You'll be surprised to see the variety of code in there, from #Linux systems code to high-level functional code!

#FreeSoftware

[Guix HPC Project @GuixHpc]

At #Guix10Years, former @Outreachy intern Danjela Lura talked about her work, her experience, and how it influenced her career 👇

▶️ https://t.co/S3jpv1GyPX

Inspiring!

#Outreachy #FreeSoftware

[genenetwork @GeneNetwork2]

Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:

https://t.co/tFAMCoEYec