#BaseCalling - Twitter Hashtag

9 months ago

The new era of single-molecule RNA modification detection through nanopore base-calling models. #DirectRNAseq #RNAmodifications #Nanopore #Sequencing #BaseCalling #Genomics @nanopore https://t.co/82GyBqlFEp

jsantoyo's tweet photo. The new era of single-molecule RNA modification detection through nanopore base-calling models. #DirectRNAseq #RNAmodifications #Nanopore #Sequencing #BaseCalling #Genomics @nanopore
https://t.co/82GyBqlFEp https://t.co/WMixzY719a

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Javier Santoyo @jsantoyo

11 months ago

Systematic benchmarking of basecalling models for RNA modification detection with highly-multiplexed nanopore sequencing. #DirectRNAsequencing #DRS #RNAmodifications #Nanopore #Genomics #Bioinformatics #ModelBenchmarking #Basecalling @biorxivpreprint https://t.co/DNWzhZOJ97

jsantoyo's tweet photo. Systematic benchmarking of basecalling models for RNA modification detection with highly-multiplexed nanopore sequencing. #DirectRNAsequencing #DRS #RNAmodifications #Nanopore #Genomics #Bioinformatics #ModelBenchmarking #Basecalling @biorxivpreprint
https://t.co/DNWzhZOJ97 https://t.co/dNnsg6xPrY

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CIBE_ESPOL

@cibe_espol

over 1 year ago

🔬 ¡Éxito en la sesión práctica de secuenciación por nanoporos ONT! Los participantes extrajeron ADN #metagenómico y 16S de cacao y suelo, prepararon genotecas, cargaron la celda y secuenciaron en tiempo real. Además, realizaron #basecalling y análisis taxonómico con #EPI2ME

cibe_espol's tweet photo. 🔬 ¡Éxito en la sesión práctica de secuenciación por nanoporos ONT!

Los participantes extrajeron ADN #metagenómico y 16S de cacao y suelo, prepararon genotecas, cargaron la celda y secuenciaron en tiempo real. Además, realizaron #basecalling y análisis taxonómico con #EPI2ME https://t.co/NLgYc7vwTG

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Tuan Nguyen @DrKangabu

about 3 years ago

Basecalling on the cloud ? Yes you can. Well, it costs a bit... But the good thing is that you don't need to bring out the biggest gun ;) #ONT #Basecalling #Cloud #AWS https://t.co/7JndVBvbDu

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Javier Santoyo @jsantoyo

over 3 years ago

nPoRe: n-polymer realigner for improved pileup-based variant calling. #LongReads #BaseCalling @BMCBioinfo https://t.co/I7oX7JFmjI

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stefano campanaro @campanarostef

over 3 years ago

Accelerated #nanopore #basecalling with SLOW5 data format | bioRxiv https://t.co/AOlGZ5WISu

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Javier Santoyo @jsantoyo

almost 4 years ago

Improved Nanopore Basecalling Models Help Reduce Sequencing Errors in Telomeres. @nanopore #Sequencing #Basecalling https://t.co/OuUQjOCZU8

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Javier Santoyo @jsantoyo

about 4 years ago

RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data. #RNA #Sequencing @nanopore #Basecalling #Bioinformatics https://t.co/nHLOmW8AmO @BMCBioinfo

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Henri van de Geest @geesthc

over 4 years ago

Go go go you beast, lets use your 10.000+ cuda cores for something more usefull than bitcoin mining! Doing ~5Mbase/sec using sup model. #basecalling #nanopore #nvidia #RTXA6000

geesthc's tweet photo. Go go go you beast, lets use your 10.000+ cuda cores for something more usefull than bitcoin mining! Doing ~5Mbase/sec using sup model.
#basecalling #nanopore #nvidia #RTXA6000 https://t.co/LbDLuNCel4

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Dr Stella Loke @LokeStella

about 5 years ago · Melbourne

Keep those Fast5s #Nanopore #Basecalling

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Egle Kudirkiene @EgleKud

over 5 years ago

By joining the forces #HenrikChristensen @strikkedrengen #basecalling with #guppy is solved! 💪😎 cant wait to run it on GPUs after this small test! 💻 #newbyjoy #collaborationisthekey 🤩

EgleKud's tweet photo. By joining the forces #HenrikChristensen @strikkedrengen #basecalling with #guppy is solved! 💪😎 cant wait to run it on GPUs after this small test! 💻 #newbyjoy #collaborationisthekey 🤩 https://t.co/MpQT7xjstS

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Egle Kudirkiene @EgleKud

over 5 years ago

After exciting #Mk1C run next steps is 1) to see it crashing during #basecalling 2) spend hours to get raw data 3) find extremely kind people who offer to do #HAC on my data as I have no ways to handle it 🙈#bioinformaticsPeopleAreTheBest 🙏❤️

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Javier Santoyo @jsantoyo

over 5 years ago

Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing. @nanopore #Basecalling https://t.co/Z3pOhpjNI9 via @GenomeBiology

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de.NBI / ELIXIR-DE @denbiOffice

over 5 years ago

3rd day of the @denbiOffice @CeBiTec @nanopore course included sessions about #basecalling, #qualitycontrol and #data #processing

denbiOffice's tweet photo. 3rd day of the @denbiOffice @CeBiTec @nanopore course included sessions about #basecalling, #qualitycontrol and #data #processing https://t.co/a7dTp0XOmc

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Albert Vilella @AlbertVilella

over 5 years ago

#nanopore #basecalling

Chris Seymour

@iiSeymour

over 5 years ago

Bonito v0.3.1 is live with a new fine-tuned basecalling model and accompanying medaka model. https://t.co/BsMEYjNmh8

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Albert Vilella @AlbertVilella

over 5 years ago

#OxfordNanopore @nanopore #Bonito #BaseCalling #Q20 #NGS

Chris Seymour

@iiSeymour

over 5 years ago

Big accuracy update coming in the next version of Bonito 🚀 v0.3.0 combines everything we have learned with structured and unstructured approaches - @dcpage3, Tim and myself are working hard on the finished touches this week - watch this space 👀

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Joe Russell @waywardsyintist

about 6 years ago

Stoked we *finally* got #nanopore #basecalling running on our latest Mercury Lab's computer system. Difficult to get Linux OS to recognize the eGPU for computations (mainly TB3 driver issues), but we eventually got it. ~30GB basecalled in 75 mins / ~300GB called in 12.5 hours!