Top Tweets for #CSBDeep
As part of CAM/NIC teaching activities @NUFeinbergMed @NU_CDB our in-house expert image analyst David Kirchenbuchler gave a tour-de-force course covering image analysis. @FijiSc @NikonInst #Noise2Void @florianjug #CARE #CSBDeep #TensorFlow #WekaSegmentation #PCA A great teacher!
If you’re looking for a friendly interface to interact with code, notebooks such as @ProjectJupyter or @GoogleColab notebooks are a great resource.
#CSBDeep, #ZerocostDL4Mic and #CellPose prepared ready-to-use notebooks to test and/or train neural networks.
Plugins such as #CSBDeep, #DeepImageJ, and #DeepMIB integrate deep learning into common image analysis toolboxes.
These plugins are a great option for those familiar with #ImageJ @Icy_BioImaging #MicroscopyImageBrowser
@ilastik_team also has deep learning tools (in beta now)
@pushkal_sharma Thank you @pushkal_sharma
I'm afraid that you'll need to train/fine-tune a model, BUT that's not a problem any more if you have some annotated images: #ZeroCostDL4Mic is your solution. Also you can try to train #DenoiSeg in the #CSBDeep plugin for ImageJ, or use #Ilastik, #Yapic
@damiandn I vote for @frauzufall's noisepecker in @FijiSc / #CSBDeep / #Noise2Void 🤓 https://t.co/Ba4fCwd704
The #i2k2020 phenotype: 10:30 PM roaming around the island, having a beer, updating CUDA, training a network and labelling images. Good thing I expected nothing less...
#CSBDeep #WeAreStarDist
@MicrobeMatos Thanks Pedro! It's really fun and the DL approaches are amazingly powerful. Especially the #CARE networks by @martweig. The implementation in #ZeroCostDL4Mic and the #CSBDeep plugin in #Fiji are super nice to use! Thanks to the entire #OpenSource #DeepLearning community!
Only possible with the help of the Heilemann @henriqueslab @seamus_holden @guijacquemet labs and the awesome #OpenSource philosophy of the DL community! #ZeroCostDL4Mic #CSBDeep #FijiSc
Source for the car AI video: https://t.co/KqpCiICodz
New tool available on the CSBDeep @FijiSc update site:
DenoiSeg - joint denoising and segmentation method based on #N2V and #CSBDeep by @tibuch_ @Mangal_Prakash_ @sagzehn @florianjug.
Details: https://t.co/d69xIrXfaI
Preprint: https://t.co/bFvkswqdWf
I learnt about an amazing tool #CSBDeep for #BioImageAnalysis @NEUBIAS_COST webinar. Thanks @florianjug and @jug_lab scientists who gave a great talk today. Looking forward to your next webinars!!!
.@florianjug & his @jug_lab team gave a very insightful @NEUBIAS_COST workshop about #CSBDeep, a #deeplearning toolbox for microscopy image restoration & analysis... Looks very powerful and easy & straightforward to use 😲 👉 https://t.co/TcKQ9nDSBe
A guide to content-aware image restoration-thank you for a very comprehensive webinar! #CSBDeep #CARE #N2V #StructN2V #DenoiSeg @jug_lab @florianjug @tibuch_ @frauzufall @sagzehn @Mangal_Prakash_ @NEUBIAS_COST #neubiasacademy #bioimageanalysis #Microscopy https://t.co/O5EhseHoYx
The @jug_lab really spent a lot of effort into making #DeepLearning for #BioImageAnalysis accessible to end-users 🤩 Kudos to @frauzufall @tibuch_ @Mangal_Prakash_ @sagzehn @florianjug et al. Awesome #CSBDeep #NeubiasAcademy 💪👍
https://t.co/uExNt3k09h
Following the newest #deeplearning developments in @FijiSc from the @jug_lab at their @NEUBIAS_COST webinar. @florianjug looking sharp in his Fiji polo shirt! #CSBDeep #Neubias #bioimageanalysis
Today at 15:30 CEST we are proud to present a bunch of useful tools! #CSBDeep #CARE #N2V #StructN2V #DenoiSeg @jug_lab @FijiSc @mpicbg @csbdresden @humantechnopole
Thank to the wonderful ppl at @NEUBIAS_COST for organizing this!!!
How to sign up? https://t.co/PXZJpTiIfO
That’s it! I hope you like it! This was a great collaboration and combination of theory and experiments and we really enjoyed it!. And a shoutout to #CSBDeep from @csbdresden, their deep learning method allowed us to get longer timelapses and get essential data for this paper!
Making use of the #ImageJ-#TensorFlow integration in @FijiSc
https://t.co/mjghjdD6uu
#CSBDeep uses this but @frauzufall says YOU MUST RETRAIN ON YOUR DATA!
#neubiasBordeaux
#Neubias
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