Top Tweets for #HighlyMultiplexedImaging
๐ข Don't miss out on this opportunity! Join us to learn about #spatialomics and #HighlyMultiplexedImaging tools and analysis with experts like @DenisSchapiro, @Vitor_Perez, and @miguelib93.
๐ Apply now and enhance your skills: ๐ https://t.co/dWDmdZFsCk
Interested in #SpatialOmics? Have a look at our course with @DenisSchapiro, Vitor Perez and @miguelib93
During this course we will discuss basics and introduce state-of-the-art software-tools tailored for spatial omics and multiplexed image analysis.
https://t.co/dWDmdZFsCk
Check out Victor Perez's talk @nextflowio #NextflowSummit presenting @nf_core pipeline for #spatialomics and #highlymultiplexedimaging.
https://t.co/kXh57Rz1fR
Do you want to learn how to analyse #HighlyMultiplexedImaging data? If yes - join us 6-9 of November for a @Physacourses online course.
Interested in #SpatialOmics? Have a look at our course with @DenisSchapiro, Vitor Perez and @miguelib93
During this course we will discuss basics and introduce state-of-the-art software-tools tailored for spatial omics and multiplexed image analysis.
https://t.co/dWDmdZFsCk
I am very much looking forward to the 3D Spatial Summit in Boston on the 21st of September. Thank you @alpenglowbio for initiating this great event! #HighlyMultiplexedImaging #spatialomics
The First Annual 3D Spatial Summit Agenda is out! Join experts from Industry and Academia discussing 3D Spatial Biology applications. Keynote by @DenisSchapiro on "From oncology to cardiology: Spatial 'Omics for topographic biomarker discovery". Register: https://t.co/j2RHHiDec5
๐ฃ Exciting news! ๐ Join our Multiplexed Image Analysis course with @DenisSchapiro, Vitor Perez and @miguelib93!
Uncover the fundamentals and discover state-of-the-art software tools tailored for #SpatialOmics. https://t.co/dWDmdZFsCk
#Bioinformatics #HighlyMultiplexedImaging
We attended the #highlymultiplexedimaging computational workshop by @NilsEling, @JonasWindhager and were extremely impressed by the content and depth of IMC analysis covered in just 2 days!@UZH_en @BodenmillerLab @VSRL_Bern @inselgruppe
Yesterday we concluded the second day of our #highlymultiplexedimaging data analysis workshop focused on #singlecell and #spatial data analysis challenges using #RStats. We demoed a number of @Bioconductor packages including #imcRtools for spatial data analysis.
Itโs always pleasure when the course is excellent both in preparation and the science๐ฌ๐ป Big thank you to the lab staff (@NilsEling @JonasWindhager ), itโs been pleasure to learn more on #spatial analysis of #highlymultiplexedimaging data from you. ๐บ๏ธ
First day of our computational workshop on #highlymultiplexedimaging lead by @JonasWindhager and @NilsEling was a full success!
Topics:
- image #visualization with @napari_imaging
- image processing with #steinbock
- data processing in #Rstats with #imcRtools & #cytomapper
First day of our computational workshop on #highlymultiplexedimaging lead by @JonasWindhager and @NilsEling was a full success!
Topics:
- image #visualization with @napari_imaging
- image processing with #steinbock
- data processing in #Rstats with #imcRtools & #cytomapper
It's the second day of the #MCMICRO hackathon at @uniklinik_hd. We are hacking away at four new modules for MCMICRO to enable new ways to interact with #HighlyMultiplexedImaging ๐ฉโ๐ป๐งโ๐ป. Progress is looking good! Here is a quick rundown of the projects: #nextflow 1/5
First day of the #MCMICRO hackathon @uniklinik_hd focusing on new modules for #HighlyMultiplexedImaging and #SpatialOmics analysis. Thank you @flowuenne for organising this great event and thank you @lunaphore for supporting our hackathon with coffee and food.
Pancreatic cancer spatial omics on the cover of @NatureGenet -- Congratulations to @DrWilliamHwang @_kjag @gojimmyguo and Hannah Hoffman who were leading this exciting study.
Thank you for the opportunity that we could contribute as well with #HighlyMultiplexedImaging
Exciting to see our story on the August cover of @NatureGenet! ๐
https://t.co/AnFx0wJWwG
#HannahHoffman @nanostringtech
Very excited that we were able to contribute to two manuscripts in the March issue @naturemethods focusing on #HighlyMultiplexedImaging
1) MCMICRO (https://t.co/UUwGIC9Jqz) which enables modular image-precessing
2) MITI (https://t.co/UeXWYIDJio) which provides data guidelines
In our March issue (https://t.co/rwTIDCIBVt) we feature a suite of papers on highly multiplexed tissue imaging! These methods are being developed and implemented at a rapid pace, and we are pleased to shine a spotlight on them with three papers and our Editorial (thread).
Honoured to have you with us! Welcome to Heidelberg and to the #HighlyMultiplexedImaging and #SpatialOmics community :)
Extremely excited to announce that I joined the lab of @DenisSchapiro at the @UniHeidelberg @uniklinik_hd this week. I will be using spatial OMICS technologies in the context of cardiovascular and other human diseases ๐จโ๐ป๐ซ. 1/3
3/nโ#MCMICRO provides a framework for the community - implemented in @nextflowio and @galaxyproject โ to develop and benchmark methods. Together with MITI (https://t.co/eUycVwnvDy) this creates a standardized framework for data handling and processing of #HighlyMultiplexedImaging
1/n - Excited to share that today @naturemethods published our scalable, modular image-processing pipeline for #HighlyMultiplexedImaging called #MCMICRO.
Code and documentation: https://t.co/3I7jCoFr6i
Manuscript: https://t.co/UUwGIC9Jqz
4/4 โ Thanks to all co-authors and funding sources
@DamonRunyon @Ludwig_Cancer @NCIHTAN @snsf_ch (Attached an example of consecutive images analyzed with different #HighlyMultiplexedImaging technologies)
1/4 -- Excited to share #MCMICRO โ A scalable, modular image-processing pipeline for #HighlyMultiplexedImaging.
bioRxiv: https://t.co/uJ2CrAHxXo
Github: https://t.co/3mG3kHXlkq
Do you have #spatial data that needs to be analyzed efficiently? Do you want to discover and dissect #intercellular relationships? To help you with such analyses, - Jovan Tanevski et al. present MISTy [https://t.co/0pHh465nQN] 1/5
![saezlab's tweet photo. Do you have #spatial data that needs to be analyzed efficiently? Do you want to discover and dissect #intercellular relationships? To help you with such analyses, - Jovan Tanevski et al. present MISTy [https://t.co/0pHh465nQN] 1/5 https://t.co/1jESJcI1HP](https://pbs.twimg.com/media/EXuN9vAWAAMLE72.jpg)
The Human Tumor Atlas Network paper is out @CellCellPress
Follow @NCIHTAN for updates. A lot of #HighlyMultiplexedImaging tools and datasets will be available soon.
https://t.co/wRMD35RsB9
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