JB Quijano

[JB Quijano @jbquij]

Excited to share our paper on Coral Reefs, where we checked intra- and inter-specific variation in Acropora heat tolerance and Symbiodiniaceae composition.

https://t.co/tfvntjYieK

[Tominaga K. (tomiken) @pacyc1841]

Revised 16S rRNA V4 hypervariable region targeting primers enhance detection of Patescibacteria and other lineages across diverse environments | ISME Communications | Oxford Academic https://t.co/oXvO83M0jJ

[Ahmed Moustafa @AhmedMoustafa]

Excited to share our new paper in Bioinformatics Advances! We introduce DeepTaxa, a deep learning tool for 16S rRNA taxonomic classification 🦠🧬 with goal to improve species-level assignment by learning both local DNA patterns and broader sequence context https://t.co/ZBEJqqhai2

[Tominaga K. (tomiken) @pacyc1841]

The missing part of the DMSP cycle in coral holobionts: Endozoicomonas exports acetate derived from DMSP degradation | bioRxiv https://t.co/MoEmdly9vB

[Tominaga K. (tomiken) @pacyc1841]

vClassifier: A Toolkit for High-Resolution Phylogenetic Classification of Prokaryotic Viruses | Bioinformatics Advances | Oxford Academic https://t.co/8BpLy67mcY

[Cesar O. Pacherres @pacherres_co]

Coral reefs are increasingly threaten by marine heatwaves, but what pushes corals past their breaking point?

New in @ScienceAdvances: we found that corals can lose the microscopic system that helps move oxygen around their tissues during heat stress 🪸

https://t.co/3NUI9D3L8E

[Evolutionary Genomics @evol_genomics]

Signatures of gene transfer in the parallel evolution of osmotrophic specialization in eukaryotes https://t.co/MPhkDrl7cw @NatureEcoEvo

[Deyang Xu @DeyangXu_CN]

Translating functional molecular knowledge into crop-breeding success
https://t.co/nh8LpjJtuV

[Tominaga K. (tomiken) @pacyc1841]

MetaStrainer: Accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples | Bioinformatics | Oxford Academic https://t.co/05p4y213aV

[Evgenii Protasov @protasov_evgeni]

Fungal ecology in the age of 'omics
#microbiology #fungi #mycology
https://t.co/DgmvwsAVNR

[Hoyaboya @Hoyaboya11]

Ferraioli et al. (2026-05 preprint, bioRxiv)
「現生有櫛動物における古代の神経系構造」
Ancient nervous system architecture in a living ctenophore

[Evgenii Protasov @protasov_evgeni]

Protists are everywhere, including the depths of the ocean abyss...
#microbiology #protists #eukaryotes
@ScienceMagazine
https://t.co/WksjrageVE

[Cameron Thrash @jcamthrash]

ProteomeLM: A proteome-scale language model enables accurate and rapid prediction of protein–protein interactions and gene essentiality across taxa https://t.co/JCYO79VDbw

[Cameron Thrash @jcamthrash]

Microbe Decoder uncovers functional traits of microbes in microbiome datasets https://t.co/7vCQlPL1VU

[Tominaga K. (tomiken) @pacyc1841]

Transplanting light-dependent reactions for mammalian eye photosynthesis: Cell https://t.co/gPRhjgPdEO

[Tominaga K. (tomiken) @pacyc1841]

Heat stress reproportions distinct metabolic sub-populations of coral-algal endosymbionts | ISME Communications | Oxford Academic https://t.co/Qy0DBWusm0

[Nagaraj Balasubramanian @AdhesionLab]

This was a long but valuable read. While some are familiar points, it offers many interesting insights. Take some time and read.

"Philosophy of biology has the potential to contribute to biology by improving scientific reasoning. However, this potential is largely unrealized because of most biologists' lack of awareness of what philosophy can offer, because of deficits in biological expertise among most philosophers, and because of adherence to disciplinary norms in philosophy that render much work in philosophy of biology irrelevant to biologists. We believe that the philosophy of biology will contribute little to biology without a change of practice. We provide guidelines on how biologists can better engage with philosophy and how philosophers can better engage with biology to create a “philosophical biology” that improves our biological understanding."

https://t.co/h5Nu2SNFlz

[谷口研究室（北海道大学医学部 統合病理学教室） @iPatho1]

シングルセルトランスクリプトーム解析と形態・生態学的解析を統合し、タンガニーカ湖シクリッド魚類の急速な適応放散が腸管細胞構成を含む多層的な食性特化進化を伴っていたことを示した論文がNature誌に発表されました。
https://t.co/q96HQ3GbJa

[Adam Steinbrenner @ADSteinbrenner]

We hope BAT will help molecular biologists to think in terms of gene trees.

Evolutionary signal within gene families is often the first clue that there is amazing, novel biology to be found.

Try out some BAT analyses of YFGs (Your Favorite Genes!)

https://t.co/4LfgOIEOIh

[Nature Japan @NatureJapan]

奪った葉緑体に「自前のタンパク質」を送り込む オルガネラ進化の手がかりを示す分子キメラ現象
柏山 祐一郎 氏らの@NatureComms #OA #論文 #細胞生物学 #分子生物学
Transient molecular chimerism for exploiting xenogeneic organelles
https://t.co/vIYjOZT1H9
#オープンアクセス
@FUT_kouhou