Jorge Duarte

interested in plant genomics and bioinformatics. tweets are my own

[Albert Vilella @AlbertVilella]

That's another slide in the same deck, with the right-hand side showing the magnified area under the curve with the line at Q30. The percentage area below Q30 and above Q30 is different between the two technologies.

[Adam Phillippy @aphillippy]

“Now with Verkko, we can essentially push a button and automatically get a complete genome sequence.” Grand claims from @sergekoren! You can hold him to that on our GitHub issues page 😉 https://t.co/MPLCxTDa0r

[Steven Salzberg 💙💛 @StevenSalzberg1]

Looks like I have to make all my programming assignments much harder: I just asked #ChatGPT to write 3 programs that I ask my undergrads to write for their first assignment, and it generated correct code in seconds, in both Python and Perl. Now what? 🤔

[Heng Li @lh3lh3]

"Protein-to-genome alignment with miniprot" published online in Bioinformatics. The title says it all. I would like to thank @thesteinegger and two other anonymous reviewers for their constructive suggestions. https://t.co/D9MWLGL8vI

[GenomicPrediction @genomic_pred]

Bioinformatics in Plant Breeding & Research on Disease Resistance https://t.co/9a2fSLjeyS

[Haoyu Cheng @ChengChhy]

New hifiasm with the ultra-long integration is released! We tested it with four diploid human samples and got many T2T chromosomes. Any feedback will be much-appreciated @lh3lh3. Source code: https://t.co/63ujHGwfmp

[Illumina @illumina]

This morning at the Illumina Genomics Forum, we unveiled our fastest, most cost-efficient sequencing machine yet – the NovaSeq X series. This technology will slash the cost to $200 per human genome and provide a readout at twice the speed. @WIRED feature: https://t.co/AeIizKAzio

[Nature Genetics @NatureGenet]

Out now! Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes (Ebler et al.) https://t.co/1LF4zDdyOp

[GeT_Genotoul @GeT_Genotoul]

🆕Join us for PacBio days on May 11th to listen to Adrien Castinel on the benefits of long read sequencing for metabarcoding analyses. @PacBio #metagenomic #sequencing #metabarcoding
➡️ https://t.co/5tAOdFt46X

[Heng Li @lh3lh3]

Preprint on hifiasm-meta, a metagenome assembler for @PacBio HiFi reads. 245 >1Mb circular contigs from a single ultra-deep sample. 75 from omnivore-vegan gut co-assembly. Sharp omnivore/vegan separation at the contig level but not at the genus level. Led by @0xfxfxf.

[Cristobal Uauy @CristobalUauy]

We are extremely excited about this project. The student will receive mentoring and outstanding training in modern crop genetics, genomics, data analysis and bioinformatics, alongside essential core scientific and transferable skills. Please apply and spread the word. Thank you!

[Frédéric Choulet @fredChoulet]

Our new paper in biorxiv. High-quality assembly of the 15Gb hexaploid wheat genome (cultivar Renan) with nanopore long-reads. Started 3 years ago, quite a lot of methodological dev, but we made it!

[GenomicPrediction @genomic_pred]

Deep-learning power & perspectives for genomic selection https://t.co/gT56iRoyRQ

[Alex Bateman @Alexbateman1]

I'm very excited to announce that you can explore the AlphaFold structural models in the @InterProDB website: https://t.co/jnief4CU0H

[David Vallenet @vallenet]

La plateforme MicroScope d'analyse de génomes microbiens @IFB_Bioinfo @CEA_Jacob_ @GenoLabgem recherche des ingénieurs en développement Web. #Job #bioinfo N'hésitez pas à postuler! Une première annonce : https://t.co/rkOR9L8Qdc

[Stephen Turner 🦋 @stephenturner.us @strnr]

From an all-star lineup @erikgarrison @zevkronenberg @erictdawson @brent_p @pjotrprins:
Vcflib and tools for processing the VCF variant call format
https://t.co/Jo6fnkObfw
https://t.co/vgkRCAW6hO

[Kishwar @kishwarshafin]

@sbarnettARK @_adameur @PacBio @nanopore Supplementary table 3: https://t.co/qYzLqEpHC0
The Illumina 35x F1-score is 0.9963. At 50x-60x you match/exceed that F1-score.

We have been using/suggesting two flowcells worth of data for accurate SNV calling and interpretation.

[bioRxiv Genomics @biorxiv_genomic]

Structural variants are a major source of gene expression differences in humans and often affect multiple nearby genes https://t.co/9YlyZdzV1u #biorxiv_genomic

[wheatgenome @wheatgenome]

Check out the IWGSC Webinar Series line-up!

👉More information about each event: https://t.co/T2IoFwJWUd

#webinar