Jade Leconte

Bioinformatics Postdoc at @MCB_UJ @JagiellonskiUni

[Rafal Mostowy @RafalMostowy]

Excited to announce that MANIAC is now out in mSystems!
https://t.co/MBDbUTuwfi

Major take-home messages:
1) MANIAC can reliably estimate ANI ~70%,
2) dsDNA phages exhibit ANI gap around 80%,
3) taxonomic assignment in temperate phages is tricky.

Give MANIAC a spin and enjoy!

[Rafal Mostowy @RafalMostowy]

🧬 Excited to share our latest preprint: we introduce MANIAC, a new tool to rapidly estimate genetic relationship between viral genomes! 🧪🔬
https://t.co/28L9t2hyvk

[dr. kelsey wood @klsywd]

Ok this is kinda neat:

If you give https://t.co/XTEx6kY7EN a scientific paper it will generate a network of references and citations!

[Rafal Mostowy @RafalMostowy]

Our work on protein modularity in phages, led by @BognaSmug, is now out in @NatureComms! Huge thanks to Krzysztof Szczepaniak, @SDuninHorkawicz & @epcrocha for a great collaboration. Thank you @NAWAPoland, @EMBO and @NCN_PL for funding it!

https://t.co/lvHjyZdbXE

[Rafal Mostowy @RafalMostowy]

Our group had a wonderful time at a meeting with labs of @ania_karnkowska and @KasiaPiwosz in the beautiful Chęciny, with exciting research presented by our amazing guests: @Tomasz_Lab, @godi_talk, @evogytis, Bartosz Waclaw & @drPiotrLukasik. Thank you @EMBO_YIP for funding!

[Steven Ge @StevenXGe]

With https://t.co/xIwKCUofyw, you can chat with your data in plain languages. Now upgraded to v. 0.96. Fix a bug and made GPT-4 available. Interactive plots via plotly and CanvasExpress!

[tom delmont @tomodelmont]

Our discovery of a major group of DNA viruses abundant in the oceans, the #mirusviruses, is out! These viruses have large genomes and a complex evolution linking #herpesviruses and #giantviruses. They pose no risk to humans but are important to plankton ->https://t.co/3Sq1QLEKmo

[ECOMAP @phytopk]

A new @phytopk paper is online "Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies" from @h_dore @ulysse_guyet @leconte_jade @eveillard
@ABiMS_SBRoscoff @FPartensky @L_Garczarek

https://t.co/gyKzfgSuVY

[ECOMAP @phytopk]

Synechococcus community composition in coastal areas, in particular along the coasts of Europe worldwide, as revealed by a bunch of @phytopk
and @ABIMS_SBRoscoff members and collaborators using the global OSD metagenomics data set. @ASSEMBLE_Plus, @SBR
https://t.co/2BDci99S8k

[ECOMAP @phytopk]

@h_dore,@leconte_jade,@drmartyo,@SoleneBreton,@D2mory,@uly_guy, @mhoebeke_sbr,@warwickuni, @r1corre, @FPartensky,@ChristopheSix1 & @L_Garczarek reveal the main differences between open-ocean and coastal Synechococcus communities
https://t.co/Ds1KTTxgVo

[Fondation Tara Océan @TaraOcean_]

⛵️J-30 - La goélette Tara rejoindra son port d’attache à #Lorient le 15 octobre après 670 jours de mission. #FS2022 la Fondation Tara Océan s’associe au @AventuriersMer et @MaisonDeLaMer pour un événement familial et festif.
🌊Programme du week-end : https://t.co/iaWAN2wUde

[BEAP Lab (Biology & Ecology of Abundant Protists) @beaplab_ibe]

EukProt, a database of proteins from 993 species across eukaryotic diversity, has been peer reviewed by @PCIgenomics and is now published in @PeerComJournal!

Database: https://t.co/AZJ01RsGfL
Peer review: https://t.co/n3ZlgIryZX
Published version: https://t.co/4WVDPegMdB

[LAGE Genoscope @GenoLAGE]

Our lab on the frontline ! 👏👏👏
Looking into the cosmopolitan distribution of the picoalgae Bathycoccus prasinos to investigate its genomic variations among temperate and polar populations.
BRAVO @leconte_jade and colleagues! @TaraOcean_ @GenoLAGE
https://t.co/2m0zRjw8oj

[T Grébert 🌊🦠🔬🧬 @T_Greb]

Very happy to share our latest findings on how the marine cyanobacteria Synechococcus gets its crazy colors! 🦠🌊🌈
(image from @L_Garczarek)
A thread 🧵👇 (1/n)

[tom delmont @tomodelmont]

Functional repertoire convergence of distantly related lineages of eukaryotic plankton abundant in the sunlit ocean. Many lineages lack culture representatives, were characterized using genome-resolved metagenomics on Tara Oceans. Plankton is fascinating !
https://t.co/LiEHwBDXJK

[GwenaelP @GwenaelPG]

Genome enabled biogeography: when the #genome sequence helps understanding the biogeography of a species, for example #Mamiellales #phytoplanton in the sunlit ocean.
Congrats @leconte_jade for your publication https://t.co/7gzbyPUoQD ! @SINGEK_ITN, @TaraOcean_, @LFelipeB

[BEAP Lab (Biology & Ecology of Abundant Protists) @beaplab_ibe]

Check out our new preprint on the global genomic biogeography of planktonic viruses, bacteria and eukaryotes <2mm, and how it is shaped by large-scale ocean currents: https://t.co/8AFhoOc3jS

Tara Oceans metagenomic & 18S V9 data, distance matrices: https://t.co/Oc6i6FCDbO