Furkan

postdoc@sabanciuniv

[EuroCC@Turkey @EuroCC_Turkey]

🎓 New MOOC by NCC Türkiye!

“Generating Mutant Protein Structures Using Advanced Techniques”

👨‍🏫 Dr. Tandaç Furkan Güçlü (Sabancı University)

https://t.co/lmBl8FDZP1
🧬💻

#MOOC #HPC #Bioinformatics #ProteinModeling #NCCTürkiye #SabancıUniversity #Supercomputing #AIforScience

[Ogün Adebali @compGenomics]

I'm excited to announce our new paper:
PHACE: Phylogeny-Aware Detection of Molecular Co-Evolution by Nurdan Kuru & me, just published in Molecular Biology and Evolution!
https://t.co/yes183VQU9
#Phylogenetics #CoEvolution #Proteins #Bioinformatics

[Benedetta Bolognesi @Bennibolo]

New cocktail 🍹 in town - in collaboration with @BenLehner : Massive combinatorial mutagenesis + amyloid kinetics selection + thermodynamic modelling showing us the portrait 🎨 of an amyloid transition state. Read about it in this great thread by co-first author @immunobananna

[EuroCC@Turkey @EuroCC_Turkey]

🚀 EuroHPC Çağrıları Bilgi Günü

💻 HPC altyapılarına ücretsiz erişim fırsatları!
🔸 EuroHPC Access Calls
🔸 Türkiye için özel MareNostrum5 Pilot Erişim Çağrısı

📅 6 Mayıs 2025 | 🕙 14:30-16:00

🔗https://t.co/Kf0ZfCENSb
#HPC #MN5 #MareNostrum5 #Supercomputing #FreeAccess

[SU_VERİM @su_verim]

Digitizing Ottoman History: A novel research project has developed a deep learning-based system to automatically transcribe printed Ottoman Turkish documents into modern Turkish. It employs a 260K-word Ottoman-era lexicon, emphasizing the importance of domain-specific vocabulary. Researchers evaluated three decoding strategies, including Word Beam Search, which uses a recognition lexicon and n-gram statistics during the decoding phase. If you are interested more: https://t.co/TZfjYW8fUz…

Esma F. Bilgin Tasdemir, Zeynep Tandoğan, S. Doğan Akansu, Fırat Kızılırmak, M. Umut Sen, Aysu Akcan, Mehmet Kuru & Berrin Yanikoglu. (2024). Automatic Transcription of Ottoman Documents Using Deep Learning. In G. Sfikas & G. Retsinas (Eds.), Document Analysis Systems: DAS 2024 (pp. 414–428). Lecture Notes in Computer Science. Springer. https://t.co/mdlrLZEliq

[EuroCC@Turkey @EuroCC_Turkey]

🚀Dialogues in the Midst: Evaluating Drug Binding in Protein Variants Using Free Energy Perturbation

F2F training on March 28, focusing on FEP simulations for drug-protein binding energy calculations.

📍Sabancı University – Altunizade Digital Campus

🔗https://t.co/W618RbpkS4

[SU_VERİM @su_verim]

Scientists record birds, insects, and mammals to monitor forest health. Acoustic data reveals hidden biodiversity patterns.

https://t.co/UsmVtkY7E4

[Tunca Doğan @tuncadogan]

Excited to share our new article 🚨

“Protein Language Models for Predicting Drug–Target Interactions: Novel Approaches, Emerging Methods & Future Directions”

with @atabeyunlu @ervaulusy @mgyigit & Melih Darcan is published in COSTBI

Free access link: https://t.co/kIwlojWAq9

[EuroCC@Turkey @EuroCC_Turkey]

Explore the new e-learning course by NCC Türkiye: Performance Engineering on CPUs and GPUs

Free and open to everyone!

Start learning now: https://t.co/UvhG0eAfns

[SU_VERİM @su_verim]

Sabancı University is proud to be part of the EuroCC4SEE initiative, contributing to the development of National Competence Centres in Southeast Europe within the EuroHPC framework.

https://t.co/1khGQ3mABd

[IBEC @IBECBarcelona]

🎉 Registration is now open! Join the 8th Annual Mutational Scanning Symposium #VariantEffect25 🌍

📆 May 21-23, 2025

📍 PRBB, Barcelona

🔴 Abstract submission deadilne: March 1st

👉 More info: https://t.co/YJQ1cbSnqg

[midstlab @midstlab]

Our manuscript on 'Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics Simulations' was the #HighlightOfTheWeek. We love this work by @mberksoz and @cananatlgn - Watch out for more of our exciting findings on nanobiosensor design!

[JCIM & JCTC Journals @JCIM_JCTC]

#HighlightOfTheWeek Transition from holo to apo conformation in a calmodulin-based calcium biosensor, GCaMP2.
#compchem
https://t.co/Mbg9Zdlxfg

[Tunca Doğan @tuncadogan]

🚨 Hacettepe Üniversitesi, Bilişim Enstitüsü'nde açılan sağlıkta yapay zeka uygulamaları odaklı "Sağlık Bilişimi Tezli Yüksek Lisans" programımıza öğrenci alınacaktır!

Başvuru için son gün 24 Ocak 2025

Bilgi için: https://t.co/oesSbIV6eR

Lütfen RT

[Furkan @mugugaipen]

Now it is open access!

[Furkan @mugugaipen]

https://t.co/5d3f5lpUBM Our paper titled "Deciphering GB1’s Single Mutational Landscape: Insights from MuMi Analysis" is published in @JPhysChem! In this paper, we first delve into molecular dynamics simulations of the wild-type GB1-IgG-Fc complex

[Busra Tayhan @Busratyhn]

Excited to share that I’ve successfully defended my MSc thesis! Huge thanks to my advisors, @cananatlgn and Ali Rana Atilgan, for their guidance, and to jury members @TastanOznur, Umut Şahin, and Nihan Çelebi for their valuable feedback. I am grateful to be part of @midstlab

[midstlab @midstlab]

One more of us moves on to the next level. @Busratyhn had a terrific master's thesis defence having a most stimulating discussion with our jury @TastanOznur Umut Şahin, Nihan Çelebi and co-advisors @cananatlgn & Ali Rana Atilgan. Great day outside offering the perfect final shot:

[Ismail Erol @habibhobo]

A small molecule enhances arrestin-3 binding to the β2-adrenergic receptor https://t.co/ScPQ1MkHh4