Nick Clark

Bioinformatics research scientist at St. Jude Children's Research Hospital

[Paul G Thomas @PGTimmune]

FLC work led by @MarkYarchoan and TIRTL by @pogorely, with @marinabaretti, Allison Kirk, @theJCClab, @awiralnepali, Nick Clark, @Asya_Minervina, @davidclaybrice, @sschattgen, Zeal Kamdar, and Balaji Sundararaman, across one or both papers and support from @FibroFoundation

[Paul G Thomas @PGTimmune]

Two complementary studies from our group out today: a therapeutic peptide vaccine trial for fibrolamellar carcinoma (FLC) & TIRTL-Seq, our robust method for deep quantitative paired TCR sequencing a🧵w/ @MarkYarchoan & @pogorely https://t.co/BN0pZK1JT0 & https://t.co/zzVmLA5zuo

[Nick Clark @nicholasaclark]

My poster at the IDG meeting:

[Nick Clark @nicholasaclark]

how many phds does it take to get tensorflow running on a Mac M1?

[Mario Niepel @NiepelMario]

Thanks to Caitlin Mills and a team of outstanding scientists the DyeDrop method together with a great demonstration of its use has been published. Who knew that playing with Nycodenz and some dyes 10 years ago would ultimately result in something useful. https://t.co/muNXgynEIE

[Nick Clark @nicholasaclark]

New paper out at Nature Communications.

It details the Dye Drop assay for measuring numbers of live and dead cells and outlines a growth-rate correction method that disentangles cell death from arrest in drug-response assays

[Laboratory of Systems Pharmacology @HarvardMedical @Harvard_Lab]

Dye Drop is a versatile, low-cost, and reproducible assay that uses sequential density displacement to obtain detailed cell cycle information in high throughput.

Want to try it? Visit https://t.co/KobpMR3zE5 to learn how!
@NatureComms https://t.co/nkRBnPWnGP

[Nick Clark @nicholasaclark]

@azureneverfades Who’s teaching though 😬

[Nick Clark @nicholasaclark]

I actually need this

[Brendan Dolan-Gavitt @moyix]

Proposal: PhD-level course in "how to get stuff to build and run". The final exam assigns you a random GitHub repo for a paper from no less than five years ago and asks you to get it running within 24 hours

[Nick Clark @nicholasaclark]

Congrats to Ratul, Nazim, and all of the other authors on this!

[Nature Biotechnology @NatureBiotech]

Single-sequence protein structure prediction using a language model and deep learning https://t.co/xlHxIEqQkt

[Nick Clark @nicholasaclark]

The https://t.co/8g4IOZBNmc paper is finally out :)

[Behrouz Shamsaei @BehrouzShamsaei]

Connecting omics signatures and revealing biological mechanisms with iLINCS https://t.co/KPAUncs8rV

[Nick Clark @nicholasaclark]

Got a free ICML tote bag 🤙
Not a bad design
#ICML2022