OpenVax

Open source software for algorithmic vaccine design and personalized cancer vaccines

[Julia Kodysh @JuliaKodysh]

I wrote up a quick tutorial on getting started with the @OpenVax cancer neoantigen vaccine pipeline: https://t.co/vwEyS5op3W

[Uri Laserson @laserson]

What's your favorite place to send your sequencing libraries to get sequenced?

[OpenVax @OpenVax]

MHCflurry 2.0 released (MHC binding and antigen processing predictor), see thread below for the associated paper

[Tim O'Donnell @timodonnell]

Our paper on MHC I ligand prediction is out today at Cell Systems! Some background and summary below. 1/
https://t.co/uoZ9rsEu9B

[OpenVax @OpenVax]

We took a really professional photo for @ACIR_org

[Benjamin D. Greenbaum @bengrbm]

We are hiring!

Interested in cutting edge computational research at the intersection of cancer, immunology and evolutionary dynamics? If so please apply:

https://t.co/hmIQMfPVvo

@IcahnMountSinai

[Benjamin D. Greenbaum @bengrbm]

Very excited about our new Center for Computational Immunology at the Tisch Cancer Institute to help to bring together some great researchers on this important topic!!! @SinaiImmunol @IcahnMountSinai @TischCancer
https://t.co/PCliYPheF8

[Horowitz Lab @Icahn School of Medicine Mount Sinai @AmirHorowitz]

Beautiful talk by @MiriamMerad! @AACR describing phenotypic and functional diversity across DC subsets within the TME

[Horowitz Lab @Icahn School of Medicine Mount Sinai @AmirHorowitz]

Very proud of grad student, Dan Fu Ruan @df_ruan1 for stellar job in presenting effects of HLA-E expression as a major determinant of antitumor function at @KeystoneSymp . Thanks very much for the opportunity to present @Dr_Nick_Bikes @EricVivier1 #CarolineRobert an #LewisLanier!

[Lipschultz Precision Immunology Institute @SinaiImmunol]

Ana Blazquez-Gonzalez from #BhardwajLab describes the Phase I clinical study she coordinates to evaluate a multi-peptide personalized neoantigen cancer vaccine. #PriismWIP

[Lipschultz Precision Immunology Institute @SinaiImmunol]

Big congratulations to @DrJohnSfakianos #BhardwajLab @AmirHorowitz @MattGalsky @adam_farkas1 for being awarded @DeptofDefense funding to study the role of #NK cells in #bladdercancer. Exciting days ahead for more translational science at MSSM!

[Miriam Merad, MD, PhD @MiriamMerad]

Claudia Jakubzick: Work hard, play hard https://t.co/N5705NtBoX

[Lipschultz Precision Immunology Institute @SinaiImmunol]

John Grout, phD student from Merad/Salmon lab performs #singlecell sequencing, #cytof and multiplex immunohistochemistry to characterize the stromal cell compartment of early stage #lung cancer. #PriismWIP

[Jeremy Goecks @jgoecks]

We have an opening for a new faculty member in Cancer Computational Immunology at OHSU. Fantastic opportunity for high impact work, great colleagues, great place to build a career. Please retweet and DM/email me if you have any questions.

https://t.co/nxnSBwrS9e

[Amrutesh S. Puranik @AmruteshPuranik]

Wow what an inspirational story!
https://t.co/WwAAZkzm8R

[Lipschultz Precision Immunology Institute @SinaiImmunol]

Happy New Year⁠ ⁠2019!
May your data be replicable, your grants funded, your applications approved and our scientific knowledge improved! #2019

[ACIR @ACIR_org]

Spotlight: (Original article appears in @eLife https://t.co/dYz9Neaem9) @rongejman @A_YChang @WeillCornell @sloan_kettering #MHC #neoantigen

[Eli Van Allen @VanAllenLab]

Presenting on clinical genomics & cancer immunotherapy in kidney cancer at @sitcancer #SITC18 right now. Not here or want to follow along online? Here’s my presentation! <1/n>

[alex rubinsteyn @iskander]

@IcahnInstitute & @OpenVax looking for candidates to work on bioinformatics for personalized cancer vaccines. Any convex combination of {bio, compsci} background welcome. Send me your resume ([email protected])

[OpenVax @OpenVax]

#CICON18 posters at B079 and B080

[Uri Laserson @laserson]

We just published our work on defining a standard file format for annotated antibody and TCR sequences, with current or planned support from many of your favorite tools. Check it out! #airr cc @bcr_tcr https://t.co/8dhpkRS2aE