Piroon

Multiplatform NGS applications, WGS and Transcriptome, Illumina, Nanopore, PacBio, bioinformatics, Instructor at Siriraj Hospital

[Piroon @piroonj]

https://t.co/9vypVEhZxS

[Piroon @piroonj]

@Thidathipw @H_Fotowatikha Dual 5090s, it took approximately ~15 hrs for dorado basecalling of WGS with 1 PromethION flow cell.

[Tip @Thidathipw]

Dual 5090 for base calling

[Nextflow @nextflowio]

🚀 Introducing #Nextflow Training Week! 🚀

A free, self-paced online training designed to help beginners get started with Nextflow.

📅 March 10-14, 2025
🎥 On-demand videos & real-time support
💬 Ask questions in our community forum

Learn more 👉 https://t.co/nTUrLAUJ75

[Oxford Nanopore @nanopore]

We’re excited to welcome @Thidathipw as our second #nanoporeconf speaker! She’ll explore how pharmacogenomics and comprehensive HLA genotyping is helping to mitigate adverse drug reactions, in Thailand.

Learn more: https://t.co/gWPtPKpgFk

[Tip @Thidathipw]

#MerryChristmas #HappyNewYear #nanopore

[Tip @Thidathipw]

Oxford @nanopore Centre of Excellence, @SirirajMedicine #Bangkok #Thailand 🙌🏻

[Oxford Nanopore @nanopore]

Proud to announce the opening of the first Centre of Excellence in SE Asia, in collaboration with @MahidolU. This landmark initiative underscores a shared commitment to advancing #genomic research & its implementation across the region.

Find out more: https://t.co/BWJOqocEOc

[manopsi @manopsi]

Siriraj is the 1st @Nanopore Centre of Excellence in ASEAN. Thanks @MahidolU @SirirajMedicine CARIVA, BDMS and all partners for the support. Kudos to @Thidathipw and Si-LOL team for this great success 👍

[Seqera @SeqeraLabs]

We are thrilled to announce the release of a new major version of the #Nextflow VSCode Extension! 🚀

The #Nextflow VSCode extension now offers a modern developer experience with:

🔹 Precise errors and warnings
🔹 Syntax highlighting and auto-formatting
🔹 Code navigation
🔹 Hover hints and code completion
🔹 Parameter schema support
🔹 DAG preview for workflows

The VSCode extension is powered by a new Language Server for #Nextflow that elevates Nextflow beyond a DSL and into a language in its own right.

👉 Find out more: https://t.co/2BA2WLT85b

[biohub @biohub]

Advances in LLMs & other computational tools could help patients + clinicians shorten the #RareDisease diagnostic journey – even when doctors haven’t seen the condition before. Experts are sharing #AI insights & more at the Science in Society 2024 meeting

[Tip @Thidathipw]

Full capacity without compromising
@nanopore

[Ines Atmosukarto @iic_a]

Looking forward to hear @Thidathipw experience ini Thailand... Indonesia can learn a lot from your infectious optimism

[Ragnar {Groot Koerkamp} 🦋 @curious_coding]

Allright, I think my blogpost on computing random minimizers is ready to share.

Runs in just under 0.5s for a full human genome :)
That's 60x-160x faster than some other implementations.

As part of this, there's also a 30x faster ntHash implementation.

https://t.co/9mcbyLT9cP

[Tip @Thidathipw]

It's Saturday, however, patients are still waiting for treatment. The doctor is eager to know the results. The doctor's questions are:
1. What is the bacterium?
2. What antibiotics is it resistant to?
3. How many species of bacteria are there? Mixed infection? @nanopore

[Piroon @piroonj]

@Thidathipw @mattloose @nanopore @richard_compton Great opportunity.

[Tip @Thidathipw]

2P2i 🦅🦅
@nanopore @SirirajMedicine #Thailand

[Mile Sikic @msikic]

Ready for >Q30 ONT reads? Herro error correction now supports both R9.4.1 and R10.4.1. simplex reads w/ @domstanojevic @DehuiLin (CHM13 -R9.4.1) #nanopore #longreads

[Tip @Thidathipw]

#pharmacogenomics @nanopore
@TTSH #SingaporeGeneralHospital

[Tip @Thidathipw]

GLIMMERS - CNV marker report for brain tumor classification got accepted today #BioinformaticsAdvances #Oxford