Sanchita Bhattacharya

Bioinformatics Project Lead, UCSF

[Sanchita Bhattacharya @Sanchitab]

Join us for the invited talks from immunology experts and a hands-on session to explore open-access immunology data @immportdb using Advanced AI tools @chatgptapp @FOCISimmunology. Please register at https://t.co/phoW9iaTNN. #AI #DataScience #FOCIS2024

[ImmPort @ImmPortDB]

🎉Exciting news! #ImmPortDB celebrates its 20th anniversary this year! 1k studies & vast amounts of immunologic & infectious disease data from 160+ areas & 35 types - is pivotal for global biomedical research! Visit: https://t.co/ji7cI6TH8z to learn more! #ImmPortDB #Research

[Atul Butte @atulbutte]

CONGRATS @ImmPortDB (@NIAIDNews @PeratonCorp @UCSF_BCHSI) on reaching 1000 #openaccess #opendata sets related to immunology and inflammation and related conditions and treatments like cancer immunotherapy and pre-term birth! I still remember when we had fewer than 50!
Some of these datasets are still quite unique, such as our downloadable clinical trials raw data, or 300+ data sets on COVID-19. Visit us at https://t.co/WSw1YbdrPL !

[ImmPort @ImmPortDB]

#ImmPortDB was thrilled to participate in DRKB- a meeting of NIH-affiliated repositories and knowledge bases.

Thanks to @skleinstein for a great presentation on ImmPort during the Community-Driven Data Curation Panel, to the organizers, and to the @NIHDataScience for having us.

[Atul Butte @atulbutte]

Thinking about applying for the Computational Models of Influenza Immunity (CMII) Cooperative Agreement Program at @NIAIDNews? See if @ImmPortDB #opendata on influenza and vaccination can help! https://t.co/zEzQyrgCo1

[Sanchita Bhattacharya @Sanchitab]

@atulbutte Cool!!

[Atul Butte @atulbutte]

Finally available in California! Sign up to join the pilot California’s mobile driver’s license / ID card is a “free, secure, and convenient digital ID”, supposedly works at SFO and LAX. Doesn’t (yet?) work with Apple Wallet like other states… https://t.co/IOJhg2ejrQ

[Petter Brodin @BrodinPetter]

Elegant #HumanImmuneVariation study by @lab_peters & @aidanbutty et al - mapping genetic determinants of plasma protein levels (@OlinkProteomics) https://t.co/0nvbRciLtA @ImperialImmuno @imperialcollege

[Ellie Barnes 🚵‍♀️ @EleanorBarnesOx]

Delighted to share in Nature Medicine, COVID19 vaccine responses in >2800 immune suppressed people. Enormous thanks to patients and superb investigators @OUHospitals @OxfordBRC @SamMurray13 @tom_marjot @Georgi_Meacham @Susannajd and many more
https://t.co/mGllALfCTA

[HIPC @hipcProject]

Go see our partners #FOCIS2023 Build your skills and then tap our golden treasure of #immune data
https://t.co/PC8bwABvpK

[Adriana Tomic @TomicAdriana]

Legacy study Revealing #COVID19 Vaccine responses, broad/ crossprotection associated with specific B and T cell subsets, beautiful story 👇👇

[Lior Pachter @lpachter]

Actually, not transforming the data outperforms log(y/s+1). 1/

[Abhishek Bhattacharya, MD @abbirdboy]

Unexpectedly won first place at the @LatchBio AI+Bio Hackathon in SF. Met these wonderful folks yesterday morning and built an application to extract social determinants of health data directly from a patient-physician conversation using OpenAI Whisper and Chat API. @vrtejus

[Adriana Tomic @TomicAdriana]

What a resource! 🤯 850,000 #scRNAseq cells from 226 samples across 10 cancer types!

[Constantin Ahlmann-Eltze (@const-ae.bsky.social) @const_ae]

If you want to explore the benchmark results yourself, check out our interactive shiny app at https://t.co/UmjBzjhfhL.

All the code of the paper is available at https://t.co/X61ICd6sao.

[Atul Butte @atulbutte]

Vaccine response #opendata in @ImmPortDB can even be used as a comparison group for new vaccine studies, as shown by Prabhu Arunachalam and team in @Nature: Systems vaccinology of the BNT162b2 mRNA vaccine in humans (paper https://t.co/dofJ8nBRWS) #FOCIS2022

[Laura Luebbert, PhD @NeuroLuebbert]

We just released #gget version 0.2.0! 🎉 Thanks to your feedback, we were able to further improve its ease of use. In addition to Ensembl IDs, gget now also supports WormBase 🪱 and FlyBase 🪰 IDs. All new features are listed here: https://t.co/9yFGH2gKiF

[Eric Topol @EricTopol]

A big day for life science
The Tabula Sapiens, like a Periodic Table of Human Cells, ~500,000 cells analyzed, 24 tissues / organs @ScienceMagazine
"a broadly useful reference to deeply understand and explore human biology at cellular resolution" https://t.co/p0z103BnZH

[ImmPort @ImmPortDB]

As we commemorate #InternationalWomensDay, we want to celebrate the wonderful women that lead and represent in #science and #research every day and make so many of the studies available in
@ImmPortDB, possible.

We thank you!

#OpenScience #DataSharing #ImmPortDB

[Atul Butte @atulbutte]

I still remember how this paper happened in lab meeting… congratulations @dvir_a and @ZichengHu!