SCON (Single-Cell Omics Network)

We are a community of researchers around Sydney who strive to improve the quality of research through discussions of all forms of single-cell modalities.

[Drew Neavin @drneavin]

Time's running out to submit an expression of interest for the 2024 @ozsinglecells hackathon in Sydney Dec 9-10! Will use Scale Bio data from stem cell-derived cardiomyocytes to develop tools for temporal dynamics.

Don't miss out, submit an EOI by Oct 15: https://t.co/IRq698sYhb

[SCON (Single-Cell Omics Network) @scon_org]

Submit your expression of interest here: https://t.co/ypv7Q48ic6 #OzSingleCell #Hackathon #SCON 2/2

[SCON (Single-Cell Omics Network) @scon_org]

Calling all SCON members! 📢 Join us for the Oz Single Cell Hackathon on Dec 9-10 in Sydney. Dive deep into "Temporal Dynamics: Defining Cellular Time" using a multi-day capture dataset. 🔬 Showcase your skills and collaborate with talented individuals! 🧠1/2

[Phan Lab @LabPhan]

Please check out this opportunity to work with amazing scientist @seyhanyazar unraveling GxE interactions in complex autoimmune diseases. Come work in exciting supportive cross-disciplinary environment in #PrecisionImmunology program @GarvanInstitute! Please share & retweet!

[Elissa Deenick @ElissaDeenick]

Regretting the fact that you missed the EOI for the Clinical Translational School? Don’t worry you’ve still got time. Deadline extended to Friday 5th July.

Don’t miss out on your chance to spend time learning from experts on the frontiers of immunology research.
@ASImmunology

[Daniel MacArthur @dgmacarthur]

We're delighted with the interest in these roles and will be looking to hire in January - if you're interested in a software/comp bio position with us helping to build a more more inclusive approaches to the prediction, diagnosis, and treatment of disease, please get in touch!

[Joseph Powell @drjosephpowell]

Register now for Lorne Genome 2023! Abstract submission is open, and oral presentations close on 11th Nov. Amazing lineup of international and national speakers, plus a phenomenal location. #lorneGenome2023 @GenomeConf https://t.co/z7aaY9w4ri

[Nature Biotechnology @NatureBiotech]

Live-seq enables single-cell transcriptome profiling as well as downstream molecular and functional analyses on the same cell by preserving cell viability #NBThighlight https://t.co/fhCqRlqiyC

[Sofia Battaglia @Sofi_Battaglia]

I am extremely enthusiastic to share our work published today in @NatureGenet. We establish a targeted @nanopore sequencing approach for ultralong-read epigenomic profiling and discover a novel, primate-specific enhancer driving bi-allelic IGF2 expression. https://t.co/5bBpA8w89t

[Luciano Martelotto 🛠🧬💻🇦🇺 @LGMartelotto]

QUESTION about Spatial Transcriptomics on FFPE (both hyb sequencing and imaging techs)…what’s the % samples you ran and failed even though the DV200 from adjacent section looked ok (say >40).

[Rahul Satija @satijalab]

Stunning preprint from @WangXiaoLab and @ganoopyliujia introducing STARmap PLUS for in-situ transcriptome profiling. Used to generate a 3D map of the whole mouse brain and spinal cord (1,000 genes, 1M+ cells)
https://t.co/l7XBQuqwGR

[Simona Cristea @simocristea]

Cancer #immunotherapy #DataScience resource of the week: #scRNAseq & #scTCRseq atlas of 400,000‼️T cells from 316 patients of 21 cancer types, derived from tumors, adjacent normal tissue, and peripheral blood.Half of data newly sequenced, half gathered from literature. 🧵(1/4)

[Emmanuel Saliba @AE_Saliba]

Interested in temporal single-cell genomics? with @DolkenL @erhard_lab @IdoAmitLab and others are very pleased to release our review in Nature Reviews @MethodsPrimers that outlines how to combine scRNA-seq and RNA metabolic labelling
https://t.co/haQH61FVcl

[Illumina @illumina]

This morning at the Illumina Genomics Forum, we unveiled our fastest, most cost-efficient sequencing machine yet – the NovaSeq X series. This technology will slash the cost to $200 per human genome and provide a readout at twice the speed. @WIRED feature: https://t.co/AeIizKAzio

[Random Fact @RandomFactsAcc]

Every human spent about half an hour as a single cell.

[Teng Gao @tGaoTeng]

Excited to share our paper describing Numbat, a haplotype-aware CNV caller for scRNA-seq, out today on @NatureBiotech!
https://t.co/HmP0e9wq01
(1/5)

[Fabian Theis @fabian_theis]

Want to come & visit our @CompHealthMuc department? Please consider applying for @HIDAdigital visiting researcher grant, enabling fully-funded short-term research stays. Next deadline is Oct 15 - great opportunity to start fun+fruitful interactions!
https://t.co/Ce8J6qsh5y

[Joseph Powell @drjosephpowell]

Registrations and abstract submissions are open for the wonderful Lorne Genome conference. 12-14th Feb 2023 in, where else .... Lorne..! @GenomeConf https://t.co/z7aaY9w4ri

[Anna Cuomo @AnnaSECuomo]

CellRegMap is finally out in @MolSystBiol! 🎉 Introducing a statistical framework to map context-specific eQTL using single-cell data, without the need to discretise single cells into distinct groups. Dream work with @tobi_heinen, @OliverStegle et al! Tweetorial 👇 (1/n)

[Joseph Powell @drjosephpowell]

The quality of the science in the #OzSingleCell22 abstracts was amazing. Sadly only space for some as talks. But it means the poster sessions will be brilliant! @ozsinglecells Few spots left; register here
https://t.co/vvuzCV4qhn