WDL Dev Team

WDL (pronounced widdle) is a workflow definition language designed from the ground up as a human-readable and -writable way to express tasks and workflows.

[WDL Dev Team @WDL_dev]

We're hosting a WDL hackathon focused on testing next week Feb 18-19 at the Broad Institute. Join us! Full details at https://t.co/36oQbjCQ6A and registration form at https://t.co/8Q0HXON0Z2

[Tristan Naumann @TristanNaumann]

Very cool to see Cromwell on Azure 1.0.0 released on GitHub! https://t.co/ZdQ9glQSZs

[Holly Caskey @hcaskey]

Earlier this month, we released Cromwell on Azure, an open-source project on GitHub from Microsoft Genomics that provides scientific workflow management for genetic analysis. https://t.co/4yhOMs7hzD #MSFTAdvocate

[WDL Dev Team @WDL_dev]

@dbernick @fdmts java -Dconfig.file=google.conf -jar cromwell-47.jar run hello.wdl -i hello.inputs

[WDL Dev Team @WDL_dev]

Featuring WDL and Cromwell on @Azure thanks to @Microsoft @Health_IT -- see also our blog at https://t.co/35jHw7yIqt. Come chat about it at the @BroadGenomics booth 714 if you're at #ASHG19 this week!

[GA4GH @GA4GH]

GA4GH Mention: Powering genomics tools and analysis with cloud computing in https://t.co/0V1Dvxu724 https://t.co/6T4hS8josj

[WDL Dev Team @WDL_dev]

Blue skies ahead for Cromwell on Azure! https://t.co/35jHw7yIqt

[Jeremy Goecks @jgoecks]

Nice overview of bioinformatics workflows definition and execution including discussion of @commonwl @galaxyproject and @WDL_dev

[Dockstore @DockstoreOrg]

Explore a WDL workflow on Dockstore by choosing between classic and EPAM visualizations.
https://t.co/JQEPsIo4Ez

[WDL Dev Team @WDL_dev]

So looking forward to having v1.0 support in @TerraBioApp ! It will unlock some really neat features with important effects like increased portability.

[Albert Vilella @AlbertVilella]

Here are my highlights of the presentation of @TerraBioApp this week explaining current and future developments in the platform: (a) @WDL_dev v1.0 support underway and (b) Terminal/CLI support ongoing in 2019Q4 and 2020

[WDL Dev Team @WDL_dev]

This blog post shows how to run WDL workflows on cloud on @TerraBioApp

[GATK Dev Team @gatk_dev]

This blog post walks you through the basic steps involved in running the preset pipelines; you'll see it's pretty straightforward. https://t.co/7cRFLTNk60

[Dockstore @DockstoreOrg]

Did you know our 1.6.0 release back in April lets you launch WDL workflows via @TerraBioApp now? Browse our workflows at https://t.co/u0VlYmLQrj and try it out!

[GATK Dev Team @gatk_dev]

Would anyone in the Boston/Cambridge area be interested in an informal meetup about GATK? Chat about current tools, go over a few practical examples of how things work, comment on development roadmap (next features coming down the pipe) etc? If so, when/where?

[Jeff Gentry @geoffjentry]

Win a trip to @OBF_BOSC this summer in Basel!

[Jeff Gentry @geoffjentry]

We had a hackathon yesterday to make the AWS support in Cromwell. A lot of great progress was made, the next release should be exciting for the AWS users :)

[Truwl @TruwL]

Are you a Python developer with experience with @WDL_dev and @commonwl ? If so, get in touch with us, we're looking for you! https://t.co/C0QDarAkz4

[Jeff Gentry @geoffjentry]

It appears Cromwell has reached "bar graffiti" status. Onwards and upwards, Jamie!

[Ethan Cerami @ecerami]

GitHub sandbox project for creating and running
@WDL_dev pipelines in Cromwell: https://t.co/SDaKPHiSvS. Runs locally and via @googlecloud Genomics API. Actually got to do some real coding over the past few weeks...!

[WDL Dev Team @WDL_dev]

@lynnlangit Hey that looks like #openwdl

[Mike Lin @DNAmlin]

If you maintain @WDL_dev workflows, "miniwdl check" can speed up your code/test/debug loop by detecting mistakes and oversights through static code analysis. Covers task shell scripts as well as WDL wiring. Early days; give it a try and file issues: https://t.co/FzQtn71IA0

[Michael Knudsen @micknudsen]

On my way home after a fabulous @gatk_dev workshop in Copenhagen. Looking forward to get started implementing #GATK4 in our clinical workflow back home. Also really impressed by #WDL, #Cromwell, and #FireCloud. Will definitely try running “FiveDollarGenome” on my own genome data.