Alan Boyle

Genomics/Bioinformatics Assoc. Prof., University of Michigan
Msstate, Duke, Stanford, Michigan
Genetic Variation, Silencers, RegulomeDB, Nanopore Tech

[ArthurZhou (@arthurzhou10.bsky.social) @ArthurZhou10]

Check out our study on using donor-specific assembly to facilitate the discovery of somatic genetic variants in bulk and single neurons of the postmortem brain. Colab with @ryan_e_mills @AP_Boyle @mikemc43 @CamilleMumm @YanmingGan

[Hyejung Won @hyejung_won]

1/ I am beyond thrilled to share our new paper in @CellCellPress! We explored the regulatory principles underlying pleiotropy in psychiatric disorders.
https://t.co/ZxsXpqwah6

[Anshul Kundaje @anshulkundaje]

Our ChromBPNet preprint out! Huge congrats to @panushri25! This was quite a slog for both of us but we r very proud of this one! It is a long read but worth it IMHO. Methods r in the supp. materials. Link in the next tweet. Bluetorial coming soon .. 1/

[Michigan Neuroscience Institute (MNI) 〽️🧠 @UM_MNI]

MNI is actively recruiting for 𝙨𝙚𝙫𝙚𝙧𝙖𝙡 𝗳𝗮𝗰𝘂𝗹𝘁𝘆 𝗽𝗼𝘀𝗶𝘁𝗶𝗼𝗻𝘀, seeking the best and brightest in #neuroscience to fill these roles. Please 💛 and r/t this to help us reach some great candidates! 〽️🧠 More info: https://t.co/vi4g0Dq2xd

[Jesse Engreitz @jengreitz]

Excited to share the white paper for the IGVF Consortium, supported by @genome_gov

Deciphering the impact of genomic variation on function

https://t.co/RxudNoG4QG

[Connor Maltby @connor_maltby]

New paper from my postdoc work at @UMichResearch is now out in @ScienceAdvances 🎉 very proud to share the culmination of nearly 4 years of hard work with a fantastic group of colleagues and collaborators.

A 🧵 of what we found out about RFC1/CANVAS 👉

https://t.co/m6vh95Ce1x

[Todd Lab @UM @realToddLab]

Our first study in a new repeat expansion disorder: CANVAS. @connor_maltby used patient iPSNs to define how this non-reference AAGGG repeat impacts neuronal function. He finds a novel role for the repeat in disease that is independent of RFC1 function https://t.co/pMIAEQqUes

[Cell Press @CellPressNews]

Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants
https://t.co/7v4J9Elg3a
@hyejung_won @jsteinlab @srikosuri @mikelove @_josedavila @brad_ruzicka @AP_Boyle
Up-and-coming genomics research from @CellGenomics #neurogenomics

[Connor Maltby @connor_maltby]

New @AP_Boyle and @realToddLab collaboration is now up on @medrxivpreprint 🥳 we used targeted long read sequencing and HMMSTR to successfully identify and genotype known or suspected large tandem repeat expansions at many loci in patient derived samples.

https://t.co/gjctDZ3bIc

[Keisuke Motone / 元根 啓佑 @KeisukeMotone]

Our preprint is out! We hacked the @nanopore sequencer to read amino acids and PTMs along protein strands. This opens up the possibility for barcode sequencing at the protein level for highly multiplexed assays, PTM monitoring, and protein identification!
https://t.co/hVdNFa7ti4

[Hyejung Won @hyejung_won]

I am beyond excited to share our new paper on massively parallel reporter assays on schizophrenia-associated variants. This is in collaboration with @jsteinlab, @srikosuri, @mikelove, @_josedavila, @brad_ruzicka, @AP_Boyle. 🧵 follows.

[Oxford Nanopore @nanopore]

Current tools can only partially validate plasmid sequences due to their inability to resolve complex regions. In this interview, Mel Englund discussed how nanopore sequencing can span entire plasmids allowing for accurate validation of complete plasmids: https://t.co/ZZyroEiSXv

[Oxford Nanopore @nanopore]

Current methods lack the scalability to validate full-length plasmid sequences. In this interview learn how nanopore technology provides a fully scalable solution for full-length plasmid validation, from the portable MinION to the high-throughput GridION. https://t.co/vjpbQTXQ0h

[Todd Lab @UM @realToddLab]

Want to join a fun, supportive, and intellectually curious lab that explores the interface between fundamental mRNA biology and human neurological disease? If so, the Todd lab might be a good fit. Check out our posting below or visit our website!

[Sue Hammoud Lab @suehammoud1]

Our protamine paper is finally out! https://t.co/jIbPBPnJpd

[Anne Carpenter, PhD @DrAnneCarpenter]

US citizens or permanent residents from an under-represented group! High school thru postdoc/faculty.

You can contact any NIH-funded researcher you admire & suggest applying for this supplement to join their lab! Many, like me, are happy to host!

https://t.co/B1wUL4jTrB

[Human Genetics and Genomics Advances @HGGAdvances]

📢New in @HGGAdvances!
@AP_Boyle & colleagues explore the challenges posed when screening for de novo variants in complex phenotypes
https://t.co/ux5LDUe9QI

[Ryan Mills @ryan_e_mills]

Really excited to be part of this with @AP_Boyle and @mikemc43! Our part of the project will be focused on exploring somatic mosaicism in single cells as well as targeted capture of specific types of variation in bulk tissue using long read nanopore sequencing.

[Alan Boyle @AP_Boyle]

@michaelhoffman @PMResearch_UHN @bhaibeka Congrats!

[Freddolino Lab @FreddolinoLab]

Happy to share that our Michigan #CASP15 team ended up placing second in Regular Targets, first in Multimeric Targets, and first in Inter-domain prediction (1/3)