Alise Ponsero

Binfie @The_Quadram -- Computational biology and data science 💻

[Hannah Pye @HannahVPye]

Our review on 'Phage Diversity in One Health' has been published in Essays in Biochemistry 🥳https://t.co/hwfHISoGAL. A big thanks to all co-authors for their contributions @EvelienAdri @Revathykri @RyanCookAMR ✨

@PPPublishing @micronorwich

[Hall Lab @hall_lab]

🚨 Exciting opportunity! We have another #PDRA role open @IMIBirmingham in @hall_lab! If you're passionate about early life #microbiome's, big data, &/or diet-microbe interactions (we're flexible in terms of skills background), check out ad & apply via 👇https://t.co/6ODGKhXDYH

[M Moniruzzaman @giant_virus]

Our latest collaborative research on giant viruses with @JedFuhrman lab on how evolutionary history dictates the temporal succession of marine giant viruses. Preprint out!
@Benjamin_Minch

https://t.co/JccVG6KP0h

[Antoine Dujon @AMDujon]

Check out our new paper in @EvolAppJournal! We predict the consequences of exposing wildlife to human-made oncogenic ecosystems and argue for the importance of accurately quantifying the costs of activating anti-cancer defences.

https://t.co/qZ1aielxGs

[M Moniruzzaman @giant_virus]

Active viral ecology of deep sea brine pool in the Gulf of Aqaba.

Latest from our lab, and great collaboration with UMiami Marine Geoscience department. Spearheaded by Monir lab PhD student @Benjamin_Minch!

https://t.co/HBdgkqX59v

[Simon Roux @simroux_virus]

#ASMicrobe Calling all phage people in the attendance (we really need some sort of phage signal, or at least an emoji...) - AMG session happening this afternoon at 1:45 in B304 ! See you there ☺️

[QIB Core Bioinformatics @QibCoreBioinfo]

📣 We are Hiring!

We are looking for a senior bioinformatician to join our great team.

⚒️ Our tools: Galaxy, Nextflow, containers, etc
🔬 Our science: microbial genomics, transcriptome, etc
🖐️ Our team: simply great

Please share :)

https://t.co/yhQk7IieXC

[QIB Core Bioinformatics @QibCoreBioinfo]

We had a blast with Iva and Florian #MerenLab
Looking forward to meeting you again!

Thanks a million ⭐️

[QIB Core Bioinformatics @QibCoreBioinfo]

Final day of #Anvio workshop at @TheQuadram.

Today we will focus on metabolism thanks to @ivaglj1va that is now summarising the pain that #annotation brings to metagenomics workflows.

#MerenLab #Metagenomics #Bioinformatics

[QIB Core Bioinformatics @QibCoreBioinfo]

This afternoon, we will cover how to bring to life high-quality Metagenome Assembled Genomes (#MAGs), again with @ivaglj1va and @FlorianTrigodet at @TheQuadram

#Anvio #Metagenomics #MerenLab

[QIB Core Bioinformatics @QibCoreBioinfo]

We are excited to have Iva Veseli and Florian Trigodet from #MerenLab here at @TheQuadram delivering a three-day workshop on #Anvio, the awesome open-source project putting wings on microbial genomics.

Today is #pagenome analysis 🔝

[Microbiome Research Reports @MicroResRep]

Hot off the press! 😍
🥝 Our latest published article: Comparison of #kmerbased de novo comparative #metagenomic tools and approaches
🍳Authors: @APonsero, Matthew Miller, Bonnie Louise Hurwitz
View: 👇https://t.co/nUN7GpljQS
#metagenomes, #kmers
Welcome to read and share! 🥰

[Bonnie Hurwitz @hurwitzlab]

Check out our new paper that compares k-mer-based de novo comparative metagenomic tools and approaches. Great work by @APonsero.
https://t.co/WsNgeLjQ2w

[Alise Ponsero @APonsero]

@tvatanen I can also recommend this benchmark for identification of integrated prophage detection

https://t.co/d0NubJ4lny

[Alise Ponsero @APonsero]

@tvatanen We recently did a benchmark of phage detection tools in metagenomes: https://t.co/0LcqqxiSwg

The benchmark dataset we created is documented and reusable for future tools comparisons and we would be happy to enrich it.

[Alise Ponsero @APonsero]

@valentynbez @tvatanen Hahaha! Indeed, that was exactly one of the biggest issue of our benchmark for these tools:

https://t.co/0LcqqxiSwg

[Elisabeth Bik @MicrobiomDigest]

The Editor in Chief of @jclinicalinvest wrote an interesting Editorial today about conflicts of interest of whistleblowers.
You can find it here: https://t.co/ma70mY5ACm

[M Moniruzzaman @giant_virus]

Our study on endogenous giant viruses (GV) of Chlaymodomans reinhardtii, an important model protist, is now out in Virus Evolution. C_reinhardtii harbors genomes of GVs >300 Kbp long, & are likely infected by multiple distinct lineages of GVs in nature!
https://t.co/GlX8cfuorh

[M Moniruzzaman @giant_virus]

The PhD. position is still open. Please share!