Axel Martin

Research biostatistician @sloan_kettering. Specialize in machine learning for predictive genomics. Interested in causal inference methods for ITRs.

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

After pulling & QAing #genomics data, the {gnomeR} package (by @Hannah_Fuchs1, @arorarshi, @CLaunderer, @karissawhiting, Mike Curry and more) helps #rstats analysts process it into an analysis-ready format.

Docs: https://t.co/0polg4ApCT

#rstats examples below 👇🧵

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

Today I want to highlight the {genieBPC} #rstats package by @jessicalavs, @sammi_brown8, @Hannah_Fuchs1, @CLaunderer, @statistishdan, and myself (@karissawhiting).

It offers functions for pulling and processing data from the @AACR GENIE BPC Project https://t.co/scsuovoL4Q #cran

[Karissa Whiting @karissawhiting]

✨A new release of {cbioportalR} v1.1.0 is now available on CRAN!

{cbioportalR} provides #rstats users with user-friendly functions for direct access to genomic and clinical data from the @cbioportal web resource. https://t.co/mwa1N4uvXE

Updates include: 🧵

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

📢🔥🚨#MSKBiostats @MSKCancerCenter is #hiring a #statistics immuno-oncology postdoc
🔗https://t.co/CiPxt6qT5e

📩A cover letter, cv, and the names of 3⃣references to Dr. Ronglai Shen ([email protected])

📌Successful applicant will be supervised by Drs. @ronglais & @KPanageas

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

🎉👏 #MSKBiostats @jessicalavs, @sammi_brown8, Mike Curry, @CLaunderer, @statistishdan & @karissawhiting recently developed {genieBPC}, a user-friendly #rstats package for processing complex clinico-genomic data from @AACR Project #genieBPC

https://t.co/meBCgIlBgV

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

👀We spy {genieBPC} on this list! #MSKBiostats @jessicalavs, @sammi_brown8, Mike Curry, @karissawhiting, @CLaunderer & @statistishdan collaborated on the {genieBPC} R package, a data processing pipeline for working with the @AACR #GENIEBPC data

https://t.co/scsuovoL4Q

[Arshi Arora @arorarshi]

Woohoo!! 🥳 new package alert! #genomics #RStats

[Memorial Sloan Kettering Biostatistics Service @MSKBiostats]

📅 Join us for the next #MSKBiostats seminar next Wed 5/4/2022 10;30am ET with guest speaker @ildiazm on Causal survival analysis under competing risks using longitudinal modified treatment policies

📩 Email Christy Rajcoomar to register: [email protected]

[Axel Martin @CLaunderer]

@ArfeAndrea There are so many things wrong with this game...

[Axel Martin @CLaunderer]

@MSKBiostats It’s the new desk I think :p

[the Juice Media @thejuicemedia]

The Australien Government has made an ad about Carbon Capture and Storage, and it’s surprisingly honest and informative. #CCS

[Axel Martin @CLaunderer]

@gonen_mithat Lambda is coming home (maybe)

[Arshi Arora @arorarshi]

📣Yours truly made an appearance in this month’s @AmstatNews magazine!! @MSKBiostats @compbiopodcast @92Y check it out - “P is for Podcaster and Potter! And P-value!”. Honored to share a bit about myself 🙇🏻‍♀️

[Saptarshi Chakraborty @SaptarshiCh]

Beyond excited to share our recent paper in @NatureComms on the prediction of the tissue site of origin of cancer tumors using the hidden genome of #rarevariants! Joint work with @CLaunderer, Zoe Guan, @ColinBBegg, and @ronglais. https://t.co/EsWTWDNjso 1/n

[Axel Martin @CLaunderer]

@whataweekhuh @margo_lou

[Nature Communications @NatureComms]

Using #genomic and #epigenomic meta-features to predict the tissue of origin of cancer from the hidden genome of #RareVariants: new #CancerResearch paper by @SaptarshiCh @CLaunderer @ColinBBegg @ronglais

@NatResCancer

https://t.co/Um1TXHoUWk

[Bridge to Biostats @Bridge2Biostats]

Biostatisticians often get asked, "What exactly do you do?" @rkatlady has a great blog post that breaks down our day (and by hour!). Most of what we do involves:
👩‍💻🧑‍💻programming
📝writing
📚reading
🤝meeting
& much more!

[Jessica Lavery @jessicalavs]

Excited (abd a bit nervous!) to be on my very first panel! #ENAR2021

[Axel Martin @CLaunderer]

@MSKBiostats Great tool for efficient TCGA pancan exploration!

[Kat Hoffman @kat_hoffman_]

My perspective of life in NYC last spring as a biostatistician on Covid-19 response efforts is in this month's @signmagazine.

It's very personal writing, but I tried to use my own experiences to capture the escalation and shared emotions of the time.