ENCODE DCC

The Data Coordinating Center for the Encyclopedia of DNA Elements. Free, accessible data at your fingertips.

[ENCODE DCC @EncodeDCC]

We are still thrilled to announce ENCODE as the latest AWS Public Data Set! https://t.co/wciuH7cBca #OpenScience @ENCODE_NIH

[Mark Gerstein @MarkGerstein]

Excited to announce that "The EN-TEx resource of personal epigenomes & variant impact models" just came out: https://t.co/rZwDmJCM2h. The paper represents the culmination of many years of work by >100 authors & has lots of useful information about allele-specific activity.

[Davide Cittaro @daweonline]

Does anybody know if chromatin segmentation (either ChromHMM or Segway) for NIH3T3 cells is available? I admit I’m not able to find it (mm10, possibly)

[4DN DCIC @4dn_dcic]

Read about the @4DNucleome data portal, now out in @NatureComms #FAIRdata https://t.co/MZY17m6nYI

[ENCODE DCC @EncodeDCC]

https://t.co/QOiG1teVy0

[NCI Cancer Control @NCICancerCtrl]

Join our May 10 SeqSPACE webinar to hear about @NIH_ORIP Precision Disease Modeling Initiative and its functional & phenotypic analysis of disease-causing variants in model organisms. Details: https://t.co/JD4IVH2RiS @bcmhouston @jacksonlab @UABNews

[DNAnexus, Inc. @dnanexus]

Are you running the data or are you run over by petabytes of data? These ten simple rules will help you to tame large-scale datasets. Read more: https://t.co/UiIX5XmkUy
@Chai_Arkarachai #bioinformatics #genomics #BigData

[4DNucleome @4DNucleome]

Supporting Talented Early Career Researchers in Genomics
RFA-HG-22-001
https://t.co/DtRjcx4Yxi

[4DN DCIC @4dn_dcic]

Looking forward to seeing everyone (virtually) and hearing about all the exciting new research at the @4DNucleome annual meeting today! DCIC demo session tomorrow (Thursday) at 11:53am PST!

[ENCODE Project @ENCODE_NIH]

**RFA Announcement**

Supporting Talented Early Career Researchers in Genomics
RFA-HG-22-001

For more information: https://t.co/Fk9U7kO1Mn

[Alliance of Genome Resources @alliancegenome]

Model organism databases are in jeopardy | Development | The Company of Biologists https://t.co/lg1eKGMoR5

[ENCODE DCC @EncodeDCC]

This is super important

[Ruth Lehmann @REMLehmann]

Without NIH support ALL model organism databases-a crucial component of biomedical research-are threatened. Make your voice heard: https://t.co/OTeBCJzBZF.
Background info @ASCBiology @GeneticsGSA :https://t.co/WidA6TejFI

[ENCODE Project @ENCODE_NIH]

#TBT! ENCODE started in September 2003 and is now in its final stages in September of 2021! 18 years of science and innovation have taken place thanks to the ENCODE team and NHGRI #ENCODE #science #genomics #humangenome #NHGRI

[CancerGenomicsCloud @genomicscloud]

Interested in genome-wide profiles of chromatin accessibility? Perform quality control and signal processing to produce alignments and measures of enrichment with the ENCODE ATAC-seq Pipeline, released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC

[CancerGenomicsCloud @genomicscloud]

Interested in analyzing chromatin modifications and binding patterns of transcription factors and other proteins? Check out the ENCODE ChIP-Seq Pipeline 2 released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC

[Cellosaurus @Cellosaurus]

Today we reached 130,000 #cellline entries in the #Cellosaurus. We tried to find a good image representing that number and found this picture of 130,000 spectators attending a mega concert of Madonna on August 29, 1987 at Parc de Sceaux near Paris

[Ali Mortazavi @calizavi]

I don’t think the long read community realizes how long PacBio cDNA reads can be with the right protocol & much higher quality thanks to CCS.

The final @ENCODE_NIH long read dataset for human and mouse will be a treasure trove for the community!

[GencodeGenes @GencodeGenes]

GENCODE are excited to support international community efforts to produce reference annotation for human ORFs discovered by Ribo-seq. Preprint: https://t.co/yZ0Puf7oqq Website text: https://t.co/maXPZ4MzXs

[GencodeGenes @GencodeGenes]

Full details of how #LRAGSP Challenge 1 will be evaluated in thread below. See link for more info.

[Ben Hitz @bonscotthoughts]

This is an infrastructure project.
Join us https://t.co/acgYLxUlu0
@anshulkundaje @ontowonka 16/16

[Ben Hitz @bonscotthoughts]

... full time data scientists and professionals, thousands - maybe millions of lines of code, and training. In particular, scientists will have to be re-trained to be more collaborative, more open, and more rigorous in detailing exactly how to reproduce their work. 15/x

[Ben Hitz @bonscotthoughts]

Preliminary findings and interesting data could be shared instantaneously with collaborators across the globe. This will never happen without top down organization. It would require equipment on the ground, computational clouds, ... 14/x