I couldn't have hoped for a better conclusion to my visit to @sangerinstitute It was an incredible experience to be able to present my work from the last six months at the #AIxBio25 conference. I’d like to deeply thank @mo_lotfollahi and @gtesta72 for giving me this opportunity.
I'm honoured to join @CRUK_CI and @Cambridge_Uni as a Junior Group Leader of AI for Cancer. My group will focus on reasoning, multimodality, hypothesis-making, and more to decode disease and health.
A few positions are opened — consider applying to outsmart cancer together!
امیدوارم که خانواده هاتون سالم باشن، چشمهامون اشک آلوده برای ایران، برای کودکان و ادم های بیگناه که به خاک و خون کشیده شدن. برای همه دانشجویان ایرانی در زمینه هوش مصنوعی و بیوانفرماتیک و زیست شناسی محاسباتی که دچار مشکل شدن برای ادامه تحصیل یا تحقیقاتشون، به من ایمیل بزننین برای مشاوره یا هرکاری که از دستم بر میاد.
(1/n) The first preprint from our lab is now out in @NatureGenet! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by @SebastianBirk_.
Paper: https://t.co/5geev3s0mV
Delighted to share my PhD thesis work is now published in @Nature! This study tracks the journey of blood stem cells in aging mice, examining how the clonal dynamics of blood production change over time. A short 🧵1/n #aging#stemcells#clonalhematopoiesis https://t.co/0TM28Hmeyt
(1/8) IMPA is published now in @NatureComms. (a) It can generate phenotypic cell painting/microscopy data images under unseen drug and genetic perturbations. (b) It learns a perturbation map of treatment similarities (small molecules together with genetic) and (c) it corrects batch effects in microscopy data. This was @ale__palmaa’s master’s thesis, which I supervised with @fabian_theis.
link to the paper: https://t.co/BLkM5lhdXl
Job opportunity! 🚨
Our lab, together with @Muzz_Haniffa's team at @sangerinstitute, is hiring an Advanced Research Assistant/Technical Specialist. We're looking for someone passionate about organoid modeling, CRISPR screening, and spatial technologies to help create accurate in vitro models. These efforts will contribute to training large-scale AI models, supported by @OpenTargets.
This role also includes opportunities to develop computational and machine learning skills.
Feel free to DM me with any questions.
Apply here: https://t.co/92p5LbHEDn
⏰ closing date: 10.01.2025
#TheBlackPhDExperience is out in the world! 🥳 Charting 27 personal stories within UK academia, find mine on academic support in Chapter 4
Thanks to our brilliant editors for their persistence & community @shaineNeuro @willackah @madina_immuno @jsd_lndn Wayne Mitchell @Bsc2Phd
Honored to have contributed to this fantastic piece of work.
PS: Thank you so much @C_D_Todd for introducing me to the fascinating world of enhancer priming over 3 years ago🙏
Preprint alert! 🎉 @C_D_Todd and the team used multi-omic profiling of human and mouse embryonic development to identify a conserved program of epigenetic priming at lineage specific enhancers for all three germ layers within the epiblast.
https://t.co/bSMkpnlfuE
Our lab, in collaboration with partners from @genentech, @sanofi, @gsk, @pfizer, @sangerinstitute, and @emblebi, has been awarded £2M by @OpenTargets to generate novel perturbation data across multiple disease models and develop large generative models to facilitate the discovery of drug targets. As part of the first wave of hires, I am looking for candidates for two machine learning-focused positions at different levels (Predoc, Postdoc) and one computational biologist. The positions available are:
1. Machine Learning Scientist (Phd required, Senior Postdoc): https://t.co/O49r8TR43c
2. Machine Learning Scientist (Postdoc, Predoc (Msc)): https://t.co/7rVQkWPJgp
3. Computational Biologist and Applied ML (Postdoc): https://t.co/LBqJFvnNQA
deadline 3.07.24
Are you interested in developing hypotheses and methods? For the curious and motivated, we are looking for a computational postdoc to join our rapidly expanding organoid team with @Muzz_Haniffa at the @sangerinstitute
Deadline 21/06, please share! 🙌🏾 https://t.co/FAwgxxDXBF
📢If you're excited about organoid models, the genetic architecture of immune diseases and the regulation of gene expression, there is a #PhD position in our lab @humantechnopole waiting for you!
Interested candidates can get in touch for more info. Please, share! 🙏
My lab is hiring a postdoc! We use state-of-the-art genomics, single-cell and spatial approaches to explore cancer initiation and evolution. Come join us at @MDAndersonNews! Please share and RT.
https://t.co/iThtvteSTN