jp

Bioinformatics mostly

[Eric Miska Lab @ericmiskalab]

(1/2) How is epigenetic memory maintained across generations? 🧬 Our latest study reveals the role of SET-24, a SET domain-containing protein in C. elegans, in preserving germline integrity and small RNA-driven epigenetic silencing. Read more in our preprint!!

[Miguel V. Almeida @migueldvalmeida]

Just in case anyone is still here, check our latest preprint, right on time before the holiday season. We explored how transposable elements (TEs) diversify eukaryotic proteomes and found a cool case in nematode F-box genes.

https://t.co/W3HYX2khNf

Short 🧵 with highlights.

[Alishba Imran @alishbaimran_]

How does AlphaFold3 predict the structures of proteins, DNA/RNA, ligands and other biomolecules? I did a deep dive into protein folding, how AlphaFold works and the new model. Here’s what I learned:

(resource in thread)

[jp @Jon_LP]

@jeremycorbyn I would vote for you for PM. You are the most genuine politician standing on any ballot on the 4th.

[The Real Greg Reyes @joceyreyes209]

$ENVX …. 👀 This was a well done spaces.

I didn’t expect to speak but appreciated being invited to share my thoughts.

I shared a number of insights in addition to providing a detailed overview of my thesis.

@EnovixBatteries

[jp @Jon_LP]

@ge_parada @ericmiskalab @omerz213 @ericmiska @CRANberriesFeed @RNAStructureBot Thank you! Next time you are in town let me know. Would be great to catch up with all the new science 👍

[jp @Jon_LP]

rnaCrosslinkOO is out in @OUPBioinfo!
https://t.co/wHxXfXYyiO
An easy to use @_R_Foundation package designed to analyse RNA cross-linking data. Raw reads to comparison of predicted structures. Data is available so please check out your favourite RNA. 1/3

[jp @Jon_LP]

As usual this is team effort! A huge thanks to everyone in @ericmiskalab. The authors - @Jon_LP, @omerz213, @ericmiska, Malte Pickert and Andrew Lim.

See what it can do 🤗
@CRANberriesFeed @RNAStructureBot #RNA #RNAStructure 3/3

[jp @Jon_LP]

We show experimental evidence for in silica predictions of EEF1A1P5. As well as benchmarking against the 18S rRNA. 2/3

[Miguel V. Almeida @migueldvalmeida]

🚨New preprint alert!!🚨 I am delighted to share my first postdoc research paper on the interaction between transposable elements (TEs) and piRNAs in African cichlid fishes 🐠🐠

Link here: https://t.co/Rj4qA4YN8r

Find the highlights in 🧵

[Tsveta Kamenova @T_Kamenova]

So excited to bring my contemplations on #lncRNA role in #lungcancer and #lungdevelopment to #RNAUK2024 🤩🤩 Thank you for the opportunity!

[jp @Jon_LP]

@Mucus_Man Hello there, I would go back and have a look at the raw counts. From the volcano plot, the plot of TPM counts does not look right

[jp @Jon_LP]

Great science and the location isn’t so bad.

#KSRNAMOD24

[Eric Miska @ericmiska]

Great start to #KSRNAMod24 Keystone RNA modification meeting in amazing Banff 🏔️😎 #RNA #Epitranscriptomics

[jp @Jon_LP]

#KSRNAMOD23

[Louna Fruchard @LounaFruchard]

My first poster at an international conference ❄️❄️ Don't hesitate to come and take a look! ☕️💫

[jp @Jon_LP]

The journey has begun, bring on the #RNA! @KeystoneSymp
#KSRNAMOD24

[Miguel V. Almeida @migueldvalmeida]

Very happy that my first contribution to the cichlid community is out🐠🐟🐠. This review was the outcome of the Genome editing workshop at @Cichlid2022. We hope it will be useful for the community! Check @_Bethan_Clark's thread for details.

[jp @Jon_LP]

@r0zetta @fchollet This is such good food

[jp @Jon_LP]

@YiliangDing @danny_incarnato @univgroningen @JohnInnesCentre @NorwichResearch @biouea @EarlhamInst @alperakay_ @WHaerty Online also?

[jp @Jon_LP]

@ericmiska @migueldvalmeida @ericmiskalab @CamBiochem @CambridgeTeClub - indeed! Very cool talk @migueldvalmeida