Lan Lan

Now located in Düsseldorf, Germany.
Get PhD degree in AGIS, China/ Murdoch university, Australia.
Interested about the genomics.

[Heng Li @lh3lh3]

Minibwa is a hybrid of bwa-mem and minimap2 and the successor of bwa-mem for short-read mapping. ~4X/2.5X as fast as bwa-mem/bwa-mem2 for WGS reads at comparable accuracy. Native support of directional bisulfite-seq. Applicable to long reads. Preprint at https://t.co/y5ZTr9btE6

[Ming "Tommy" Tang @tangming2005]

Nature Protocols: Structural variant calling using Sniffles2 https://t.co/MzO6YOu5u9

[Ming "Tommy" Tang @tangming2005]

1/ Everyone’s chasing AI.
But in bioinformatics, solid foundations still win.
Here’s why mastering the basics matters more than ever. 🧵

[ASHG @GeneticsSociety]

What does it really mean for a trait to be “polygenic”? @Luke0connor & Guy Sella, authors of @AJHGNews' latest article, define polygenicity from first principles, introducing clear, quantitative measures: https://t.co/zZnVnYU4fn #ASHG #HumanGenetics #GeneticsDiscoveries

[bioRxiv Evobio @biorxiv_evobio]

GhostHunter: A Multi-Test Framework for Detecting Ghost Introgression https://t.co/8i0GOiHozg #biorxiv_evobio

[Javier del Campo @fonamental]

OrthoGarden: a Pipeline for Propagating Phylogenetic Trees for Non-Model Organisms from Short Reads and de novo Genome Assemblies https://t.co/aBxbjaJHPm

[Sainsbury Laboratory Cambridge University (SLCU) @slcuplants]

Hiding in plain sight! 2.3M conserved non-coding sequences traced back 300M years across 284 plant species
Ground-breaking study in First Release @ScienceMagazine from labs of Madelaine Bartlett, Idane Efroni & Zach Lippman
▶️ https://t.co/7Ukf22WwrC
▶️ https://t.co/OiFhHoDd4Q

[Evolutionary Genomics @evol_genomics]

The impact of incomplete taxon sampling on inference of gene flow by Bayesian and summary methods using genomic sequence data https://t.co/zvbMCzI3PN @systbiol

[Evolutionary Genomics @evol_genomics]

An Evolving View of Species Tree Inference https://t.co/aPbp8DWl7u @systbiol

[bioRxiv Genomics @biorxiv_genomic]

Genomic selection for seed yield enhances flax breeding efficiency https://t.co/0OxvrxB9W6 #biorxiv_genomic

[antisense. @razoralign]

Pangenome-guided sequence assembly via binary optimization https://t.co/R2IXeiIOFH

[@EcoEvoRxiv @ecoevorxiv]

Transposable elements as drivers of reproductive isolation: A framework for testing hybridization-induced escalation of genetic conflicts
https://t.co/GV8X0CkqNo

[Yongfeng Zhou🍇🍷周永锋@[email protected] @yongfeng_zhou]

Population genomics reveals association of transposable elements variants with climatic adaptation in wild Amur grape https://t.co/MlKJWJ1nIE
@NaturePortfolio @NatureComms @IVES_publisher @VitisGen @Hortres @ASHS_Hort @ASPB @PlantEditors @GlobalPlantGPC @GrapeResearch

[🧬Jacob L Steenwyk @jlsteenwyk]

OrthoSNAP v1.6.0 is out. If you process large phylogenomic datasets, this release is built for your workflow.

- bootstrap-aware consensus subgrouping:
- --bootstrap-trees
- --consensus-min-frequency
- --consensus-trees
- --resume for interrupted or repeat analyses (1/2)

[Evolutionary Genomics @evol_genomics]

“Integrative Phylogenomics” Integrates Sources of Error https://t.co/Ce4Gwg6Qfe @ScienceMagazine

[Stephen Turner 🦋 @stephenturner.us @strnr]

The genetic foundations of convergent traits https://t.co/iAOUX1yAKe (free: https://t.co/TpMny8ddvv) 🧬💻🧪

[bioRxiv Evobio @biorxiv_evobio]

The transposable elements syndrome of wheat domestication https://t.co/ygkd6gBzfT #biorxiv_evobio

[André Marques @marques_et_al]

Another beauty from our recent study!

HoloTracking thousands of holocentromeres' synteny across 40 MY of evolution

Turns out holocentromeres can be stable in identity but wildly dynamic in structure. 🧬

If you want to read more about it, here: https://t.co/zDnjUxyJtO

[bioRxiv Genomics @biorxiv_genomic]

Integrating Structural Variants into Sequence-Based GWAS Using a Pangenome and Imputation Framework in French Dairy Cattle https://t.co/LvfqBMehfP #biorxiv_genomic

[bioRxiv Genomics @biorxiv_genomic]

Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres https://t.co/PlMWrJj6zX #biorxiv_genomic