Scalzitti Nicolas

Postdoc at @michiganstateu

[Thomas Weber @weber8thomas]

Excited to publish MosaiCatcher v2! A cutting-edge snakemake workflow for Structural Variation (SV) detection at the single-cell level using Strand-seq data. Dive into our twittorial to learn more! 🧵
Many thanks to @JanKorbel5 & Marco Cosenza ! #EMBL
https://t.co/qKZT02TsK1

[Scalzitti Nicolas @Nicolas_S68]

@sokrypton New genome annotation strategy using artificial intelligence algorithms #DALLE3

[Scalzitti Nicolas @Nicolas_S68]

@sokrypton New genome annotation strategy using artificial intelligence algorithms #DALLE3

[MultiQC @MultiQC]

I'm very happy to announce that MultiQC v1.15 was just released! 🎉

https://t.co/yHwXNtRcv9

It comes with 🐛 fixes for @10xGenomics #CellRanger fix, #mosdepth tweaks, and supports a new tool #Librarian to predict library type from FastQ base composition 🕵🏻‍♂️🧬 plus much more! 🧵

[Kuan-Hao Chao @KuanHaoChao]

📢📢Dear friends, our new software, Splam, a deep learning-based splice junction predictor, is now officially released🎉If you do RNA-Seq data analysis or need a reliable tool to evaluate splice junctions/introns, Splam is the perfect fit for you
🔗 https://t.co/R345pehx5l
(1/10)

[Thomas Weber @weber8thomas]

Democratising computational part of Strand-Seq with MosaiCatcher v2, twittorial coming soon! 🧬🧵

[Scalzitti Nicolas @Nicolas_S68]

https://t.co/UOokvKkC65

[Scalzitti Nicolas @Nicolas_S68]

https://t.co/Ed64wfV7Ct

[Scalzitti Nicolas @Nicolas_S68]

Happy to share our latest article📄'CeGAL: Redefining a Widespread Fungal-Specific Transcription Factor Family Using an In Silico Error-Tracking Approach'.
https://t.co/Hv83FbYdzy
#fungi #TranscriptionFactor #GenomeAnnotationErrors @Claudinemayer12 @conerade67

[Scalzitti Nicolas @Nicolas_S68]

@lilycnft It's well known that is Neftlix...

[Breakthrough @brkthroughprize]

“Change the world” is a phrase we hear a lot. But Demis Hassabis and John Jumper @DeepMind did. AlphaFold has solved the protein structure prediction problem, one of the central challenges in biology and medicine. They win the 2023 Breakthrough Prize in Life Sciences.

[Scalzitti Nicolas @Nicolas_S68]

I am pleased to announce that I am starting a new adventure at @michiganstateu🟢. After my PhD at the @unistra in the CSTB Team (thanks to all), I am happy to join the @banzhaf_lab (@BEACON_Center) to continue my wonderful journey in #computer_science💻 and #Bioinformatics

[Thomas Weber @weber8thomas]

Work with snakemake pipelines? Need to process data using conditional execution? Let's get a look at my tutorial on #snakemake checkpoints 🐍 1/2
#Bioinformatics

[Scalzitti Nicolas @Nicolas_S68]

Thanks to @CRBS_Strasbourg, for giving us the opportunity to share our research at #CRBSdays!
It was a pleasure to present #Spliceator, a universal predictor of eukaryotic splice sites.

[Florence Allain @FlorenceAllain]

#CRBSdays ongoing Poster session @CRBS_Strasbourg

[Papers with Code @paperswithcode]

🎉 We've crossed 6000 Benchmarks! 🎉

We now maintain more than 6.4K benchmarks for machine learning. A huge thanks to the research community for ongoing contributions.

Browse all benchmarks here: https://t.co/stfzzn0IfM

[(((JReuben1))) @jreuben1]

Emergent Artificial Intelligence: Self-Organizing, Self-Assembling ALife https://t.co/EsEboYMqVS
- Evolutionary Search QD-Algorithms (quality-diversity) + Genetic Programming
- Parameter Sharing + Iteratively merging learning rules
- Variational Neural Cellular Automata

[Scalzitti Nicolas @Nicolas_S68]

It is a pleasure to present our new paper on multi-species splice site prediction. https://t.co/sZSr0o4mY7

#Spliceator #bioinformatics #CSTB

[Scalzitti Nicolas @Nicolas_S68]

It was a pleasure to participate to the 'Journées du Campus d'Illkirch 2021' and to be awarded one of the two prizes for the 'Best oral presentation'. I had the opportunity to present my project about splice site prediction using deep learning algorithm.

Thanks to the committee!

[Thomas Weber @weber8thomas]

Encore un séisme @strasbourg, a quand des prises de décisions de la part de notre nouvelle maire @JeanneBarsegh ?