Vinícius Contessoto

[bioRxiv Genomics @biorxiv_genomic]

Epigenetics is all you need: A Transformer to decode chromatin structural compartments from the epigenome https://t.co/YFx5NUixil #biorxiv_genomic

[Sumitabha Brahmachari @sumitabha590]

Excited to share our preprint on bacterial chromosome organization. Using Hi-C data-driven simulation modeling of B. subtilis, we reveal that *cooperation* between the SMC and ParAB proteins drives faithful segregation of the replicating genome (Ori segregation).

[Reginald DesRoches @RDesRoches]

Researchers from @riceuniversity and partnering institutions have discovered ancient chromosomes in the preserved remains of a 52,000-year-old woolly mammoth, providing insights into the history of life on Earth that were previously thought impossible. https://t.co/6LrcaGbpll

[Sumitabha Brahmachari @sumitabha590]

New @BiophysJ article! Sustained enthusiasm by @BenjaminSRuben who started this project as an undergraduate has led to this. We studied how chromosomes behave under mechanical stress by simulating their axial stretching https://t.co/8WBl17YSrG

[Benjamin S Ruben @BenjaminSRuben]

For a summary of our main findings, see this tweet from co-author @sumitabha590: https://t.co/WORloidMKO

Thank you also to @DiPierroLab, @Vini_Contessoto, Ryan Cheng, Antonio B Oilveira Junior, and José N. Onuchic for making this work possible.

[Phys.org @physorg_com]

Mosquito's DNA could provide clues on gene expression, regulation @RiceUniversity @NatureComms @sciencemagazine https://t.co/W18RKo2P8z https://t.co/9Q2s4orMW3

[Di Pierro Lab @DiPierroLab]

Genomic architectures are far more diverse than previously believed; yet, the physical processes that form this diversity should be similar, because molecular evolution is slow. In our latest work we argue that: 1/4

https://t.co/7r3ZJHexLm

[Sumitabha Brahmachari @sumitabha590]

Excited to share @NAR_Open: Shaping the #genome via #lengthwiseCompaction, #phaseSeparation, and #lamina adhesion. Competition between these three thermodynamic forces recapitulates #chromosome-level organizational features seen across species. https://t.co/lwTJxdOzU3

[Lena Simine @thesiminegroup]

Looking for a postdoc for a sizzling hot project in active learning for chemical design at @McGillChemistry in a collaboration with @NRC_CNRC and @Mila_Quebec, background or interest in chem/physics is expected. RT is appreciated! #AcademicTwitter #AcademicChatter #chemtwitter

[bioRxiv @biorxivpreprint]

Quantifying the Effect of Anti-cancer Compound (Piperlongumine) on Cancer Cells Using Single-Cell Force Spectroscopy https://t.co/XZQKrdvtMZ #bioRxiv

[Esteban Dodero-Rojas @edoderorojas]

This paper was published in eLife.
https://t.co/9TMXFsOHWg

[Esteban Dodero-Rojas @edoderorojas]

New paper on the conformational change of SARS-COV-2 Spike protein that facilitates the entry of the virus. https://t.co/YMTXXbVcpD

[bioRxiv @biorxivpreprint]

SMOG 2 and OpenSMOG: Extending the limits of structure-based models https://t.co/TccIeXthIW #bioRxiv

[Vinícius Contessoto @Vini_Contessoto]

Happy to share this very nice study that I had the opportunity to participate in. Thanks to the CTBP team: Esteban Dodero-Rojas, Paul Whitford, and José N. Onuchic.
Rice, Rutgers developing inhalable COVID-19 vaccine spray https://t.co/k3Zs2PIvg0

[Vinícius Contessoto @Vini_Contessoto]

@JanaShenLab @silvafb29

[Di Pierro Lab @DiPierroLab]

Today we launch the Nucleome Data Bank (NDB), a web-based platform to simulate and analyze the three-dimensional organization of genomes. The NDB is available at https://t.co/vXviYwCp6Z. Check it out! https://t.co/pdVgdhqEaU

[Di Pierro Lab @DiPierroLab]

Check out our new paper in @ScienceMagazine ! A marriage of theory and experiments in collaboration with the Center for Theoretical Biological Physics, Benjamin Rowland @NKI_nl, @theaidenlab, @thednazoo, and many other institutions across the world. https://t.co/WWONIpEGQa

[Erez Lieberman Aiden @erezaterez]

Excited about a new collaboration between the Rowland, Onuchic, Di Pierro, and @theaidenlab labs and @thednazoo which was led by @odudcha Ahmed Elbatch, Claire Hoencamp and Sumitabha Brahmachari, appearing in @ScienceMagazine today. A tweetorial!

[Kazuhiro Maeshima @kazu_maeshima]

3D genomics across the tree of life reveals condensin II as a determinant of architecture type https://t.co/Wwesnynkgp