Harsh Dweep

[Harsh Dweep @HarshBioinfo]

How to cite miRWalk2.0?
http://t.co/WIq0eh5cGO

[Harsh Dweep @HarshBioinfo]

@HuffyBicycles I recently purchased a 'MotoX Kids' Quick Connect Bike, 14-inch' (SKU: 79449) and sadly, it arrived defective. I've reached out to support via email/phone but haven't received a response yet. Can someone please assist with a refund or replacement? Thank you!

[janesh @kumarjan]

Project Associate-II position in my lab @ccmb_csir. Last date to submit application through online portal: 18th October 2022
See details:
https://t.co/Iqf1d4nTk9

Interested candidates with suitable experience may apply.

[Harsh Dweep @HarshBioinfo]

@kumarjan @India_Alliance Congratulations Janesh sir!!!

[Harsh Dweep @HarshBioinfo]

@kumarjan Happy Dussehra.

[Harsh Dweep @HarshBioinfo]

@mikhaeldito313 SingleR, Seurat v4, Cibersort, Clustifyr, PanglaoDB are good resources for cell characterization.

[Harsh Dweep @HarshBioinfo]

@thePiggsBoson @readwiseio save the thread!

[Harsh Dweep @HarshBioinfo]

@BecomingDataSci 10

[Rahul Satija @satijalab]

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on March 26. Talks will feature recent exciting computational and experimental advances and will be livestreamed at https://t.co/zG98gkckMU. Please RT/spread the word!

[Harsh Dweep @HarshBioinfo]

@ChetanyaPandya @ChetanyaPandya congratulations 🎉 and Happy New Year!

[Dmitry Kobak @hippopedoid]

In a new paper with @JanLause & @CellTypist we argue that the best approach for normalization of UMI counts is *analytic Pearson residuals*, using NB model with an offset term for seq depth. + We analyze related 2019 papers by @satijalab and @rafalab. /1

https://t.co/EnfDNA7AkC

[Harsh Dweep @HarshBioinfo]

@jamescai @SingleCellMedia Thank you for the suggestion and retweet. I give it a try.

[Harsh Dweep @HarshBioinfo]

Does anyone have experience predicting macrophages from mouse single cell data?
I have tried singleR with celldex and scRNAseq but not getting enough macrophages.
Any suggestions?

[Olivier Elemento @ElementoLab]

New preprint from our group: Using Histopathology Images to Predict Chromosomal Instability in Breast Cancer: A Deep Learning Approach https://t.co/mRTkHf304k

[Harsh Dweep @HarshBioinfo]

@tangming2005 @roelverhaak @lucapinello Congratulations Ming!

[Harsh Dweep @HarshBioinfo]

@tangming2005 In addition to @reskejak suggestions, how about fitting a linear model (+batch effect can also be controlled; if any)?

[Harsh Dweep @HarshBioinfo]

@tangming2005 Monocle has gene modules identification function for trajectory analysis, but I don't know if that can be considered for cluster specific modules: find_gene_modules()

[Harsh Dweep @HarshBioinfo]

@tangming2005 singleR
Cibersort

[Cancer Immunoprevention Network @NCI_CIPNet]

#IOTNMoonshot has released the Bioconductor IOTN suite, which includes over 450 @Bioconductor software and workflow for a wide range of state-of-the-art analyses for genomic, phenotypic and functional assays in immune-oncology studies. https://t.co/Gxltw31Z9s

[Harsh Dweep @HarshBioinfo]

@cgihou Dear CGI Houston:
Thank you for your prompt reply. I highly appreciate your time!

Thank you,
Harsh

[Harsh Dweep @HarshBioinfo]

@cgihou Are the miscellaneous services affected by Harvey hurricane? I'd like to send a package belonging to miscellaneous services. Thanks