Jayaram Kancherla

[Jayaram Kancherla @jayaram]

a year ago we (+@realAaronLun) announced Kana (https://t.co/rquL0IAITm), to perform #singlecell analysis in the browser powered by #webassembly. This week we released version 3 to support multi-modal data analysis, gene set enrichment and exploration of pre-analyzed results (1/n)

[Jayaram Kancherla @jayaram]

Seamlessly access R/Bioconductor annotations in Python!

The new "txdb" package lets you load standard TxDb SQLite databases and work with genomic features as native #BiocPy `GenomicRanges` objects.

Try it: `pip install txdb`
docs: https://t.co/X6D8e0LcYB

[Jayaram Kancherla @jayaram]

forgot to tag: @realAaronLun

[Jayaram Kancherla @jayaram]

The GenomicRanges (https://t.co/zVl4ariAVZ) package for Python got a major speed boost (v0.7.0+) thanks to Aaron’s blazing-fast C++ nclist interval indexing!

#Bioinformatics #Genomics #Bioconductor

[Jayaram Kancherla @jayaram]

If you're building Python pipelines for genomics, check out GenomicRanges. For feature requests or feedback, reach out to us on GitHub!

Try it: `pip install genomicranges`
Contribute: https://t.co/zVl4ariAVZ

#BiocPy

[Jayaram Kancherla @jayaram]

If this generation is Gen Alpha, I say we call the next one Gen AI—because they'll probably ask ChatGPT than reddit for advice.

[Hector Corrada Bravo @hcorrada]

Join our ML for Genomics group working directly with me on spatial biology.

https://t.co/iY4OFXxOjB

[Jean-Philippe Fortin @JayPykw]

Powerful use of the RNA-targeting Csm complex!

We've now extended the crisprVerse to make CRISPR-Csm gRNA design easy: https://t.co/VlEr7X9fwf

[Jayaram Kancherla @jayaram]

@passle_ @PaoloDiTommaso next step is replace to-regex-range with a one liner...

[Jayaram Kancherla @jayaram]

@dagarfield @nomad421 the mice community disagrees ;)

[Jayaram Kancherla @jayaram]

@nomad421 @vsbuffalo also congrats 👏

[Jayaram Kancherla @jayaram]

@nomad421 @vsbuffalo no Python downstream?

[𝕐 @nomad421]

Really nice writeup on the hugely impressive MetaGraph work by @gxr, @akkah21, @m_karasikov, @HarunMustafa416 (& others whose handles I don't know) in @ScienceMagazine: https://t.co/3h3uCgWsaU. Some comments by @ZaminIqbal, Lesley Hoyles and myself! Congrats @m_karasikov & team!

[Jayaram Kancherla @jayaram]

@AstraKernel javascript?

[Jayaram Kancherla @jayaram]

@nomad421 Can non-rust folks join as well? #askingforafriend 🙂

[Aya Abdelsalam Ismail @asalam_91]

Check out our work today at #ICLR2024. We insert a concept bottleneck layer into generative models, which allows us to interpret, control, and debug them.
This is a first step towards interpretable generative modeling!

@juliusadml @hcorrada @stephenrra @kchonyc

[Jayaram Kancherla @jayaram]

@vsbuffalo @isugif I wonder how this compares to tiledb - https://t.co/SOMShJKjdx

[Jayaram Kancherla @jayaram]

@madhurarrao ask an LLM to summarize them all...

[Jayaram Kancherla @jayaram]

@strnr Thank you for sharing these threads, these have been super helpful 👍

[Michael Fischbach @mfgrp]

How to pick a problem. Today in @CellCellPress. 1/53
https://t.co/Id4YaXWuup