José Gonçalves Dias

Antigo vencedor do Jogo do 24 | Bioinformatician at Universitätsklinikum Frankfurt | Handball player and casual jogger

[José Gonçalves Dias @jmgdias]

And my first paper is now published on G3 @GeneticsGSA with @MGStetter
With PopAmaranth we provide a resource to help amaranth and plant domestication research with a population genetic genome browser.
Available at https://t.co/SKx5igbZoG
#AcademicTwitter #amaranth #domestication

[Markus Stetter @MGStetter]

Now published in G3 @GeneticsGSA: "PopAmaranth: A population genetic genome browser for grain amaranths and their wild relatives" Work by @jmgdias. Great review process, thank you @GeneticsGSA. https://t.co/rX6yfSV1sb

[Markus Stetter @MGStetter]

Very happy and proud that amaranth made it on the cover of @NewPhyt ! https://t.co/Cd5IcV6D14 . Read more about our work on betalain pigment regulation in amaranth flowers by @ts_winkler et al. https://t.co/yoxe8WC2tj

[José Gonçalves Dias @jmgdias]

@MGStetter @NewPhyt @ts_winkler This is so cool!

[José Gonçalves Dias @jmgdias]

@margariddantas Finally my turn arrived (:

[José Gonçalves Dias @jmgdias]

A day to be remembered! Especially when getting a last chance of making the PI suffer 😄

[Markus Stetter @MGStetter]

Yesterday was a big day for @jmgdias (and me). Very happy that the first PhD from the Stetter lab has been awarded. Congrats @jmdias !

[José Gonçalves Dias @jmgdias]

@travisdotmedia Obsidian for all, scribe for “scribbling”. No more loose papers and pens everywhere

[José Gonçalves Dias @jmgdias]

@JDVandeVelde Congrats Jozefien! Well done!

[José Gonçalves Dias @jmgdias]

Great opportunity!

[Markus Stetter @MGStetter]

Still time to apply! TWO postdoc positions in my lab. One molecular one Computational.
https://t.co/jJTole1GiX
https://t.co/1OvC9fQbno

[nf-core @nf_core]

Delighted to announce that a new @nf_core preprint manuscript has just gone live!

A collaboration with @EuroFaang, the paper covers updates to @nextflowio and @nf_core, and describes the experience of the @EuroFaang adopted @nf_core.

Let's dive in...🧵

https://t.co/bV7gfJijhi

[Markus Stetter @MGStetter]

Join us!!! We are looking for a postdoc and head of the molecular biology team. Do you want to contribute to plant evolutionary questions using molecular techniques? Here is your opportunity to do so. https://t.co/jJTole18tp

[ORCID Organization @ORCID_Org]

Did you know?

ORCID + GitHub are now integrated, which means GitHub users can link their validated ORCID iD to their public GitHub profile.

Read more and get your GitHub profiled linked with ORCID today! https://t.co/UcKis1Kmq2

[José Gonçalves Dias @jmgdias]

@jsantoyo @nanopore @TrendsGenetics Hi Javier,
We were interested in reading the article, but unfortunately, our institution has no access. Could you please share it? I cannot reach you by DM as not a verified user.

[José Gonçalves Dias @jmgdias]

@Artifexx @obsdmd @zotero How does obsidian handle all these PDFs? Does it not get too slow?

[José Gonçalves Dias @jmgdias]

@Artifexx @obsdmd This is a great example.
I am trying to do something similar, but going via Zotero. I would love to avoid that.
Any way to extract the metadata of the research articles via annotator?
That is what keeps me stuck with using Zotero alongside Obsidian still

[Aline Muyle @Aline_MUYLE]

Workshop on evolutionary genomics for plant models and crops: May 13-17th at CIBIO, Portugal

[Kieran Samuk @ksamuk]

PSA, since I've now seen problems arising from this: As of Sept 2023, GATK no longer makes missing genotypes explicit in VCFs (i.e. "./." as in the VCF spec). Missing genotypes are instead coded as "0/0" with a DP=0 format field. See attached for examples.

[Markus Stetter @MGStetter]

Our interdisciplinary collaboration: „Eight arguments why biodiversity is important to safeguard food security“ https://t.co/sk1xQuLtk3

[bioRxiv Bioinfo @biorxiv_bioinfo]

edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and ... https://t.co/A7MJHrmLvY #biorxiv_bioinfo

[Jan-Henning Klusmann @JhKmann]

After a strenuous but very successful year, there was every reason to celebrate at the Dep. Pediatric. My thanks go to all colleagues at the clinic for their immense commitment. Even though we now see the winter wave rolling towards us, we look to the year 2024 with confidence

[José Gonçalves Dias @jmgdias]

@keithstewartart Following up on this. We arrived yesterday evening and all went smooth.
No problem at all and the hotel is fully operational.

[José Gonçalves Dias @jmgdias]

@keithstewartart No. Condor is flying still and the hotel is operating, so for now nothing was offered