Maciej Dobrzynski

computational biologist | data scientist | biophysicist | modeller

[Maciej Dobrzynski @macdobry]

Code an image classifier from scratch using numpy only. Watch the network train on a nano dataset.
https://t.co/p8IyqauwkA

#MachineLearning #NeuralNetworks #tutorial #Python

[Maciej Dobrzynski @macdobry]

A step-by-step tutorial for detecting collective phenomena in time-lapse images in a new #OpenAccess article in Methods in Microscopy from @degruyter_brill @benigraedel @paoloarmando83 @PertzL, https://t.co/P5zsmgfSxm

[John Bogovic @BogovicJohn]

@david_legland blows the minds of students and teachers alike. Do NOT measure a shape's perimeter by counting pixels! See @ahklemm and @cmci_'s reactions at #EMBOBioImage

[Maciej Dobrzynski @macdobry]

Our training at #EMBOBioImage @EMBLEvents Feels like I’ve stepped into NASA’s Mission Control. 🚀👩‍🚀 Expecting a countdown for Ctrl+Alt+Delete any moment now. 🤓

[Robert Haase @haesleinhuepf]

#EMBOBioImage poster session @EMBOevents in full swing 🔬🖥️🤯

[Maciej Dobrzynski @macdobry]

Catching up with the pre-course material for the Advanced Bioimaging Analysis training in Heidelberg. Looking forward to networking and learning all the latest in #bioimageanalysis @EMBLEvents #EMBOBioImage

[Maciej Dobrzynski @macdobry]

A dream software/hardware stack for smart #microscopy developed by our fantastic PhD student @lhinderling

[Lucien Hinderling @lhinderling]

What if you could talk to your microscope? Honoured to present our work @PertzL on real-time image processing and smart microscopy! Video shows @manager_micro control using #OmegaAgent by @loicaroyer

[Maciej Dobrzynski @macdobry]

@AssafZaritsky @bengurionu @TelAvivUni @Sari_Natan @Elkabetslab @AssafNahum @miller_gad @CommsBio A very clever approach, congrats 👍🏻 Great to see the paper published!

[Maciej Dobrzynski @macdobry]

@DaveKeating Looking forward to hearing the solution from EC. A day ticket for Europe could solve the issue. Like a single Interrail ticket.

[Maciej Dobrzynski @macdobry]

Finally out! Quantify collective phenomena with our computational tool ARCOS.

[Journal of Cell Biology @JCellBiol]

.@paoloarmando83, @benigraedel et al. develop ARCOS, a method to detect & quantify collective signaling in cell collectives. Open-source and user-friendly, w/ R & Python packages, and a @napari_imaging plugin: https://t.co/6OHKFnvuPl

@lhinderling @PascalEnder @PertzL @macdobry

[Maciej Dobrzynski @macdobry]

@strickland_ev @JasonPTown That’s open science at its finest! 👍🏻

[Maciej Dobrzynski @macdobry]

Great to see ARCOS (https://t.co/8InU6pMQCO) applied to such a beautiful phenomenon 👍🏻

[Maciej Dobrzynski @macdobry]

Fund a project that will democratize microfabrication by using cheap, off-the-shelf components
#crowdfunding #opensource #Science #technology

[Lucien Hinderling @lhinderling]

How to 3D-print any microfluidic device or stamp for micropatterning? Quick iteration times, from design idea to seeding cells in one day, no clean room required.
Short thread on a method we’re working on in the lab!

[Peyman Milanfar @docmilanfar]

don’t be misled by low-order statistics

[Marine Biological Laboratory (MBL) @MBLScience]

DL@MBL: Deep Learning for Microscopy Image Analysis (#DLatMBL)

Course Dates: August 21 – September 5, 2023
Application Deadline: May 18, 2023

https://t.co/EFFUgzjcmp

[Maciej Dobrzynski @macdobry]

Fantastic collaborative spirit at 2023 @NEUBIAS_ training and symposium. We need to create sustainable support for the amazing #bioimaging #opensource software and prevent the infamous code rot. Interesting to see @ChanZuckerberg financing so many projects. Thank you all!

[Maciej Dobrzynski @macdobry]

Strong Swiss representation at @NEUBIAS_ symposium in Porto🇨🇭💪🏻 @SwissBIAS #ImageAnalysis #MachineLearning #DeepLearning

[Michael Baym @baym]

<chefs kiss>
https://t.co/exbvGWcCh9

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Are you a grad student, postdoc, or early-career PI and passionate about teaching and learning #bioimageanalysis? So passionate you want to talk about it for 4 days next February with an AMAZING group of folks (see next)? If so, please apply to our @Co_Biologists workshop! 1/3

[Kota Miura @cmci_]

Daniel Sage insisting us to estimate the CO2 consumption for the computation we use for each bioimage analysis project by a python library offered at https://t.co/WIlRLBW0uU : NEUBIAS Porto 2023