morpheus

Multicellular modeling environment from TU Dresden.

👩‍🔬↔💻

News and support. Tweets by @wdeback

[morpheus @morpheus_lab]

It is out! The new 🎉 Morpheus v2 🎉 is now available for Windows, Mac OSX and Linux. An overview of all the goodies in this new blog post: https://t.co/kMx8IHi6A6 Please upgrade and spread the word.

[ZIH (TU Dresden) @zih_tud]

Check out the @EBItraining virtual course on "Mathematics of life" with spatial modelling and reproducible modelling. Including a Morpheus tutorial by @morpheus_lab/@zih_tud!

[morpheus @morpheus_lab]

@AlvaroKohn You‘re welcome ☺️

[morpheus @morpheus_lab]

Check out the @EBItraining virtual course on 'Mathematics of life' with spatial modelling and reproducible modelling. Including a Morpheus tutorial!

[EMBL-EBI Training @EBItraining]

Join us #virtually this September.

The full programme for 'Mathematics of life' can now be found on our website. It features talks, tutorials and plenty of opportunity for group projects. #EBImaths

💻 https://t.co/yORzZUEV96
⏰ Applications close 14 Aug 2020

[PLOS Comp Biol @PLOSCompBiol]

New research from Beck and colleagues: "Stochastic simulations and parameter estimation for multiple-hitting T cells" - read it here: https://t.co/SxXHUvAPKm

[Yannik Schälte @yannik_schaelte]

3/4 We @JanHasenauer lab @ICBMunich developed the #HPC ready tool #pyABC (https://t.co/VYXugH6Blb), with e.g. self-tuned distances and proposal kernels. Together with @morpheus_lab we develop the @FitMultiCell platform tailored to multi-cellular systems. #YoungScientistsHMGU

[Distill @distillpub]

Growing Neural Cellular Automata -- A new Distill article by @zzznah, @RandazzoEttore, @eyvindn and @drmichaellevin
https://t.co/nXJ7lkH6VM

[morpheus @morpheus_lab]

Jörm Starruß will present our work on ABC param fitting of Morpheus simulations @icsb2019 today in Tunnel Gallery 14:10-15:30: „Integrative worflow of modelling and parameter estimation for quantitative multicellular systems biology“.

More info here: https://t.co/BrIYscYDcn

[morpheus @morpheus_lab]

@margrietpalm Here, cells of two populations are created on the left and right side of the domain.

[morpheus @morpheus_lab]

@margrietpalm Yes, you can use the AddCell plugin. Here, for instance, a cell is created every 100 time steps, in the left part of the domain.

[morpheus @morpheus_lab]

Not in Okiwana? See our renewed Morpheus tutorials for self-paced learning

https://t.co/knljy3tSDq

[morpheus @morpheus_lab]

@icsb2019 @combine_coord @denbiOffice Hands-on tutorials and live demos of Morpheus 2.1 will takes place October 31, 11:40 (Japan time) at the OIST Center Building, Level C, Room C210.

[morpheus @morpheus_lab]

To all modellers in Okinawa @icsb2019: We're providing a Morpheus workshop at the satellite event organized by @COMBINE_coord and @denbiOffice. #ICSB2019 https://t.co/J4CYfQV1z7

[morpheus @morpheus_lab]

@AlvaroKohn @Fysikk_UniOslo Great! Let us know if we can help by offering support.

[Alvaro Köhn-Luque @AlvaroKohn]

This week I will be teaching part of a Biophysics course @Fysikk_UniOslo focusing on the modeling and simulation of multicellular and multiscale systems using @morpheus_lab

[Yannik Schälte @yannik_schaelte]

The 2nd #fitmulticell meeting in Heidelberg already showed great progress on the path to data-driven modeling of multi-cellular systems. Check out how we integrate #pyabc and @morpheus_lab at https://t.co/rYOeSjUbrO!

[Jan Hasenauer @JanHasenauer]

Happy to announce that pyABC version 0.9.15 is now available. The new release of this @HPC-ready @ParameterEstimation tool provides additional interfaces to external simulators, enhanced visualisation capabilities and a more detailed documentation.

https://t.co/wz6wSniiAc

[Alvaro Köhn-Luque @AlvaroKohn]

@drmichaellevin I recommend you @morpheus_lab those type of simulations can be run with very little effort. You can start here: https://t.co/JaJH9ndxBH

[morpheus @morpheus_lab]

@rheiland @compucell3d @Chaste_Project @AndySomogyi @JochenKursawe @wdeback Probably not long enough to achieve a full, comprehensive, conclusive consensus on the complete multicell standard. But we should be able to lay the foundations.

[morpheus @morpheus_lab]

Day 2 of our meeting on standardization of multicellular models: a two-track hackaton 🤓 discussing and implementing (1) tools to translate models between simulators 👨‍💻 and (2) creating a multicell language specification.

Check aims and program here 👇
https://t.co/yVUXAK6Nld