Nicolas Strauli

Interacting with the immune / pathogen interaction

[Alessandro Sette @SetteLab]

After our previous studies of convalescent
#COVID donors, a new chapter analyzing the acute phase of disease @ljiresearch @profshanecrotty

Antigen-specific adaptive immunity to SARS-CoV-2 in acute COVID-19 and associations with age and disease severity https://t.co/VOHGCNf4xo

[Olivia Pham @OliviaPhamNow]

Calling Eco/evol students: Interested in learning how to code in R? Sign up for our program! We did a shorter session this summer & it was amazing to see how much students can learn with just a few hours a week!

[Yuval Avnir @yuval_avnir]

Distinct clonal evolution of B-cells in HIV controllers with neutralizing antibody breadth https://t.co/XLVw9X6squ

[Debora Marks @deboramarks]

Do we need new ways to analyze biological sequences? Will it make a difference? Yes -
https://t.co/3sUnEYxqoc

[Yuval Avnir @yuval_avnir]

JCI Insight - Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses https://t.co/DyRpJGvHTU

[Naftali Kaminski @KaminskiMed]

1/n Our Collaborative "Single-Cell Omics Reveals Dyssynchrony of the Innate & Adaptive Immune System in Progressive #COVID19" paper is now on @medrxivpreprint. We provide @10xGenomics #scRNAseq, #Cite, #TCRseq & #BCRseq: my nonimmunologist's tweets follow https://t.co/zMKBoC18vH

[Yuval Avnir @yuval_avnir]

An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity https://t.co/2C5hD3mo3M

[Capra Lab @capra_lab]

Excited to share our preprint on using machine learning to predict preterm birth risk from ~40,000 electronic health records from Vanderbilt and UCSF. Great collaboration lead by @abin_abe with: @msirota84, @RokasLab, @CosminABejan, @Velez_Edwards, others. https://t.co/EunlR9vajK

[Charleston Chiang @CharlestonCWKC]

Interesting way to efficiently parallelize all pairwise comparisons. I still remember the days I had to parallelize on just running IBD analysis among 15,000 individuals...

https://t.co/2NZdA2Eenl

[Yuval Avnir @yuval_avnir]

#PLOSCompBio: AncesTree: An interactive immunoglobulin lineage tree visualizer https://t.co/qLNdmm6TiY

[Andrew Kern @pastramimachine]

New version of this important preprint from @SamurSciCop https://t.co/vgO18V9duM

[Yuval Avnir @yuval_avnir]

Longitudinal isolation of potent near-germline SARS-CoV-2-neutralizing antibodies from COVID-19 patients https://t.co/k9oPuJrHsQ

[Jeannette Tenthorey @JTenthorey]

Excited to share our preprint, describing the (surprisingly many) routes an antiviral protein can take to evolve and maintain potency against viruses. Shout out to fantastic trainee coauthors @candiceleilani & @afeez_sodeinde, + @memerman @HarmitMalik.
https://t.co/O0SoxwG8Ve

[Oxford Protein Informatics Group (OPIG) @OPIGlets]

Our latest paper describes paratyping - a new way to analyse immune repertoires. Read about it here!

https://t.co/922WuJgoBl

#antibody #immunology #bioinformatics

[Yuval Avnir @yuval_avnir]

B cell clonal expansion and convergent antibody responses to SARS-CoV-2 https://t.co/vnbNfUIla7

[Sarah Cobey @sarahcobey]

@nataliexdean Importance cannot be overstated: "At the end of April, health authorities also plan to roll out a large-scale antibody study, testing random samples of 100,000 people across Germany every week to gauge where immunity is building up." That's the only way forward.

[Matt Raybould @mijr12]

Our new structural analysis of Ab repertoires supports substantial levels of Ab baseline rep functional commonality, and identifies structural responses to vaccination. If you can share COVID-19 Rep-seq data, we will build convergent response libraries!

https://t.co/n0JTmYMERq

[Trevor Bedford @trvrb]

Together, I believe these (and other case-based) strategies can bring down the epidemic. This is the Apollo program of our times. Let's get to it. 19/19

[Harmit S. Malik @HarmitMalik]

A serological assay to detect SARS-CoV-2 seroconversion in humans | medRxiv| Much needed breakthrough from ⁦@florian_krammer⁩ lab https://t.co/tnaW09i7L4

[Mangul Lab @USC @MangulLab]

Mangul Lab releases preprint of review on read alignment techniques! https://t.co/f9Y67BsLwA