Jiangzhao

[Jiangzhao @qjiangzhao]

Are you still struggling with the manual curation of TEs? Do you want to know the magic of cleaning TE MSAs with only a single button click?
Welcome to try TEtrimmer (paper will come soon)
https://t.co/PV8SUwokHp
I am also looking forward to discussing this with you in #ICTE2024

[Jiangzhao @qjiangzhao]

@stefan_kusch @NatureComms Many thanks! Thanks for all the support.

[Shujun Ou @SigmaFacto]

I want to share our latest work on a forward simulation framework on transposable element evolution. The TE Evolution Simulation Suite, or TESS, contains three components that can simulate many scenarios of genome evolution under the impact of TEs.

[Shujun Ou @SigmaFacto]

Hello world! I have a postdoc position immediately available in my lab. It will focus on identifying high-quality transposons in many genomes and finding their impacts in evolution and traits. Most works, including EDTA2 development and annotation of 400+ genomes, are done! 1/n

[Jiangzhao @qjiangzhao]

We created a comprehensive video tutorial on how to use TEtrimmerGUI to curate your TE consensus sequences.
Watch it here:
https://t.co/fp0b3hhPvb

[Simon Maechling @simonmaechling]

Between 2001-2010, the EU spent €200 million on 50 research projects studying GM crop safety for the environment, animals, and human health.

The conclusion?

No evidence shows GM crops carry more risk than conventional plants or organisms.

https://t.co/6oEBenPgyh

[Aaron Vogan @Hulk_Vogan]

We're hiring! If you're looking for a postdoc position and are interested in #fungal genomics and/or giant transposons please apply. We're hoping to find someone with experience transforming A. fumigatus.
https://t.co/XtGxP56CeU

[Leibniz IPK @LeibnizIPK]

A team led by the @LeibnizIPK, incl. @Nils__Stein and @murukarthickj, reports a pangenome of barley comprising long-read sequence assemblies of 76 wild and domesticated genomes. The results were published in @Nature.
➡️PR: https://t.co/OPGj30Gnh6
➡️Paper: https://t.co/dtj63QWdkH

[thomas wicker @thomaswicker314]

Great news: our article on the analysis of 76 barley genomes has just been published

https://t.co/ZHCLzTzsRH

[Jordana Oliveira @jordana_olive]

It is out: "Analyses of transposable elements in arbuscular mycorrhizal fungi support evolutionary parallels with filamentous plant pathogens"
@Blunt_Microbe @Ken_M_Mugambi

https://t.co/EcK5O4VmdY

[bioRxiv Bioinfo @biorxiv_bioinfo]

TE-Seq: A Transposable Element Annotation and RNA-Seq Pipeline https://t.co/qyifsFKbAR #biorxiv_bioinfo

[Tony Heitkam 🌱🔍💚 (left this site for 🟦🦋) @toheitka]

🌱🧬Excited to let you know that I will be joining @RWTH as Professor in Molecular Botany this Fall.

In Aachen, we will continue to look at plant genomes and chromosomes, focusing on #RepetitiveDNAs, esp. #TransposableElements: Impact on regulation & evolution? Use in breeding?

[Shujun Ou @SigmaFacto]

How TEs gain and lose between tropical and temperate maize inbreds? We found that tropical corns have 35Mb more TEs than temperates, and it's mainly due to a small number of LTR families that are young, less methylated, and more expressed in tropical maize.https://t.co/LbZDKwlkjN

[Shujun Ou @SigmaFacto]

Happy to share four strategies to annotate TEs and other repeats in maize and other plant genomes. You can shop for an approach depending on the goal, including gene-focused annotation, TE-focused study, comprehensive annotation, and pan-genome annotation: https://t.co/FQxjh9hRZ6

[Mariana Schuster @MariSchuster]

Just out 📣
It is my pleasure to share our latest review on #effector #proteases from plant pathogens by @jessiana_lee and yours truly : https://t.co/Cm43PSFYLL

[Huiluo Cao 曹慧荦 @hlcao]

The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks | Nature Methods https://t.co/Ccmo8CSR4C

[GenomeMining @MiningGenome]

🧬👩‍💻 Integrated learning for the win! By merging computational and molecular biology training, students are better equipped to tackle complex genome research. Read about this successful course model! #Genomics #EducationInnovation
https://t.co/bzwWMcLV0b

[Macas lab @MacasLab]

Excited to share our tools for LTR-retrotransposon annotation in plant genomes ! Supported by @ELIXIRCZ. https://t.co/7uS3yCsJ0E

[Cristina Barragan @cbarragan__]

Excited to see our peer-reviewed work on recurrent horizontal mini-chromosome transfer in the blast fungus now out! ✨
https://t.co/xxTpde8sRe

Thanks team 🌈 @smlatorreo @ThorstenLangner @KamounLab @hernanaburbano @YuSugiharaY @joewinnz @Adeline_Harant @AngusMalmgren

[𝕐 @nomad421]

#bioinformatics peeps! Version 0.6.1 of oarfish—our tool for transcript quantification from long-read #RNAseq reads—is out! It brings some cool new features & quality-of-life improvements. Check it out in the link, but here’s my favorite new feature! 1/
https://t.co/8i4oEK1g32

[Robert Haase @haesleinhuepf]

Are you interested in an Introduction to Large Language Models; in the context of BioImage Analysis?
Join my @GloBIAS_ seminar this Tuesday 3pm CEST.
https://t.co/nilatkaLYp