Here is my method to conduct (and automate) a literature review.
Using Google Scholar, @scite , @litmaps , #ChatGPT, @zotero and @obsdmd.
Tutorial with examples and best practices:
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Need a #virus or #phage bioinformatics tool?
Have a #virus or #phage bioinformatics tool?
Check out this google sheet and add your new tools
https://t.co/cULTGWQfva
aweMAGs: a fully automated workflow for quality assessment and annotation of eukaryotic genomes from metagenomes https://t.co/vORY92jT7N #biorxiv_bioinfo
New lab preprint: We have a new wrapper 'ViWrap' to enable viromics and viral ecology studies. Software freely available on github. Feedback welcome. https://t.co/10G846OyYZ
After years of methodological research, linear regression takes the cake yet again (which somewhat agrees with our 2021 @PLOSCompBiol paper: https://t.co/DG98auc0uv)
Moral of the story: 'Simplicity is the ultimate sophistication' 🙂
Link: https://t.co/DXjHljK5ya
Comparing scientific abstracts generated by ChatGPT to original abstracts using an artificial intelligence output detector, plagiarism detector, and blinded human reviewers https://t.co/h4I3RKxCuk
Our latest curiosity driven observation article @mSphereJ
We report differences in the species contributing to key gut functions & redundancy in Dutch individuals with different dietary habits @SFuentes_Micro
& and collaborators @rivm & @UMCUtrecht
https://t.co/QXG37qjXWh
binny: an automated binning algorithm to recover high-quality genomes from complex #metagenomics datasets https://t.co/DjAgUOJvFo https://t.co/eO1S1qPrzJ
🎉 New tutorial 🎉 Ever wanted to go from raw metagenome reads to a handy taxonomic table like the ones in phyloseq or speedyseq? Sourmash gather & sourmash tax get you there quickly and accurately 🏃♀️ 💯 https://t.co/2ySJP72it9
Any RNA #phage fans around? Then you might not want to miss our August #virusesinsilico lecture. Simon Roux @simroux_virus will be speaking about an unprecedented and so-far-uncharacterized richness of #RNAphages.
Registration is free: https://t.co/VTmzh6Z6EG
Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host Range
@mSystemsJ by @GamaLopLeal et al
https://t.co/erRoCwHY1N
📢 Attention RSG leaders: RSG committee has announced the third call of the RSG funding program. Send your applications by 15th of August!
Make sure to check the announcement on the Basecamp project for more details. For queries, contact [email protected] :)