Thomas Jeanne

Passionate about microbial ecology. Aspiring to travel a lot!

[Benjamin Callahan @bejcal]

decontam functionality is now available through QIIME2. Thanks Jorden Rabasco and QIIME team.

[UN Biodiversity @UNBiodiversity]

Healthy #soil is a real powerhouse:

🐞 Habitat for soil #biodiversity
🌤️ Carbon store and #climate regulator
💧 Water tank and purifier
🌻 #Food producer
🏺 Keeper of heritage

Protecting #soilhealth ensures its many functions that enable life on Earth!

via @unccd

[Thomas Jeanne @thomasbioc]

My colleague Richard Hogue present a poster at #GSB2023
Long-term effect of crop management practices on Clay soil properties and microbial diversity
Poster number: P98

[Thomas Jeanne @thomasbioc]

Spatial, temporal and technical variability in the diversity of prokaryotes and fungi in agricultural soils. @irda_qc #soilhealth #soilmicrobiome #soilbiodiversity #qiime2  Frontiers in soil science https://t.co/mXnkpUYc9N

[Jacob Nearing @JTNearing]

My new review on bias in microbiome studies is out in the journal Microbiome! https://t.co/IyiLy3TDuO I originally wrote this as part of my comprehensive exam for @Dal_micro_immun ! I'm glad that it is now being shared with the rest of the field #microbiome

[Benjamin Callahan @bejcal]

Good new work leveraging accurate long-read amplicon sequencing to generate far more comprehensive references for specific environments. Makes standard amplicon profiling more informative and comparable across studies: https://t.co/5fRmT59YtS @msdueholm @MadsAlbertsen85

[eLife - the journal @eLife]

From today, code can be an integral part of a paper published in eLife. Announcing the Executable Research Article, a new open format for research papers where code can be run directly in the browser https://t.co/2ImG9XSq0l

[QIIME 2 @qiime2]

Want to learn about microbiome bioinformatics from members of the @qiime2 team? Mark your calendars for October 5-9, 2020 for a five-day **online** course! Details at https://t.co/PUMpksPyJy

[Karyne Duplessis P. @Robealabouche]

À la recherche des vignobles québécois ? Voici une carte ! https://t.co/tPgBtemtoZ via @lp_lapresse

[Morgan Langille @BetaScience]

Our PICRUSt2 manuscript is out in Nat. Biotech. https://t.co/PBsYCBPouS

Absolutely phenomenal work by @gavin_m_douglas

#16S #microbiome #metagenomics #bioinformatics

[Mehrbod Estaki @MehrbodEstaki]

Our @qiime2 protocols paper is finally online at @currentprotocol! Long time in the making. Endless thanks to the amazing team I got to work with on this, especially Serene Jiang, the other co-1st. A summary of what makes this tutorial useful:
https://t.co/6Nq0veqFJw 1/10

[Mehrbod Estaki @MehrbodEstaki]

This study recommends truncating reads with q=18 before DADA2. Please don't do this! You will lose lots of your useful reads. My first twitterant. 1/18 https://t.co/nKXVug4361

[Nextstrain @nextstrain]

When data & science are moving this fast, it's hard to keep up. After a short pause, we are very happy to have a new #COVID19 #SARSCoV2 Situation Report Narrative online at https://t.co/kFachAu7Da. Translations will follow.

Here, we cover what the latest sequences tell us. (1/2)

[Dr Dean Lomax @Dean_R_Lomax]

Oh, wow! Check this out.⠀
⠀
A farmer stumbled upon FOUR giant armadillo relatives, called glyptodonts, in Buenos Aires, Argentina. Presumably, the close association suggests they were a social group.

They're about 20,000 years old. ⠀

Images: CEN/Incuapa-Conicet.

[Thomas Jeanne @thomasbioc]

@EssiColo @fedora @gnome Cool! Tu passes en mode dnf shell😉

[Marie Simonin @MicrobialMarie]

So happy to see this paper led by @JenniferRocca1 out in @ESAEcology!
We show that rare microbial taxa emerge during community coalescence and drive the maintenance of microbial functions and diversity.
With @DrBioGC @JPWrightEcology @Alex_Washburne https://t.co/bIH0rrYuvm

[One R Package a Day @RLangPackage]

metacoder - A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy). #rstats https://t.co/fQJOSAv70T

[Jason "boundless delight " Williams @JasonWilliamsNY]

Thank you 2011 @MarkGerstein - I needed to say exactly this in my slide deck and this figure is quite prescient, especially thinking about commercial cloud. https://t.co/xh6ElCHQ0f

[QIIME 2 @qiime2]

we’re excited to announce that QIIME 2 was funded in the @CZIScience Essential Open Source Software for Science program! brief details on our plans below, with more info coming soon. thanks to our community and
@CZIScience for the support! @NAUResearch

https://t.co/F02OCBbVKe